* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘adapt3’ ...
** this is package ‘adapt3’ version ‘1.0.1’
** package ‘adapt3’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (3+b1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp14ga4S/R.INSTALL646816d39e2cf/adapt3/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lefko3/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lefko3/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c projection.cpp -o projection.o
projection.cpp:5571:8: warning: variable 'pure_fleslie' set but not used [-Wunused-but-set-variable]
5571 | bool pure_fleslie {false}; // Are all function-based MPMs Leslie MPMs?
| ^
projection.cpp:5576:7: warning: variable 'stageframe_count' set but not used [-Wunused-but-set-variable]
5576 | int stageframe_count {0};
| ^
projection.cpp:5577:7: warning: variable 'stageframe_notNull_count' set but not used [-Wunused-but-set-variable]
5577 | int stageframe_notNull_count {0};
| ^
projection.cpp:5578:7: warning: variable 'supplement_count' set but not used [-Wunused-but-set-variable]
5578 | int supplement_count {0};
| ^
projection.cpp:5579:7: warning: variable 'equivalence_count' set but not used [-Wunused-but-set-variable]
5579 | int equivalence_count {0};
| ^
projection.cpp:5580:7: warning: variable 'start_count' set but not used [-Wunused-but-set-variable]
5580 | int start_count {0};
| ^
projection.cpp:5581:7: warning: variable 'tweights_count' set but not used [-Wunused-but-set-variable]
5581 | int tweights_count {0};
| ^
projection.cpp:5582:7: warning: variable 'density_count' set but not used [-Wunused-but-set-variable]
5582 | int density_count {0};
| ^
projection.cpp:5583:7: warning: variable 'entry_time_count' set but not used [-Wunused-but-set-variable]
5583 | int entry_time_count {0};
| ^
projection.cpp:5584:7: warning: variable 'density_vr_count' set but not used [-Wunused-but-set-variable]
5584 | int density_vr_count {0};
| ^
projection.cpp:5585:7: warning: variable 'sparse_vec_count' set but not used [-Wunused-but-set-variable]
5585 | int sparse_vec_count {0};
| ^
projection.cpp:5586:7: warning: variable 'found_fleslie' set but not used [-Wunused-but-set-variable]
5586 | int found_fleslie {0};
| ^
projection.cpp:16582:7: warning: unused variable 'stageframe_count' [-Wunused-variable]
16582 | int stageframe_count {0};
| ^~~~~~~~~~~~~~~~
projection.cpp:16583:7: warning: variable 'stageframe_notNull_count' set but not used [-Wunused-but-set-variable]
16583 | int stageframe_notNull_count {0};
| ^
projection.cpp:16584:7: warning: unused variable 'supplement_count' [-Wunused-variable]
16584 | int supplement_count {0};
| ^~~~~~~~~~~~~~~~
projection.cpp:16585:7: warning: variable 'equivalence_count' set but not used [-Wunused-but-set-variable]
16585 | int equivalence_count {0};
| ^
projection.cpp:16586:7: warning: variable 'start_count' set but not used [-Wunused-but-set-variable]
16586 | int start_count {0};
| ^
projection.cpp:16587:7: warning: variable 'tweights_count' set but not used [-Wunused-but-set-variable]
16587 | int tweights_count {0};
| ^
projection.cpp:16588:7: warning: variable 'density_count' set but not used [-Wunused-but-set-variable]
16588 | int density_count {0};
| ^
projection.cpp:16590:7: warning: variable 'entry_time_count' set but not used [-Wunused-but-set-variable]
16590 | int entry_time_count {0};
| ^
projection.cpp:16591:7: warning: variable 'density_vr_count' set but not used [-Wunused-but-set-variable]
16591 | int density_vr_count {0};
| ^
projection.cpp:16592:7: warning: variable 'sparse_vec_count' set but not used [-Wunused-but-set-variable]
16592 | int sparse_vec_count {0};
| ^
projection.cpp:16604:8: warning: variable 'prebreeding_bool' set but not used [-Wunused-but-set-variable]
16604 | bool prebreeding_bool {true};
| ^
23 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lefko3/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c utilities.cpp -o utilities.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o adapt3.so RcppExports.o projection.o utilities.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp14ga4S/R.INSTALL646816d39e2cf/adapt3/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp14ga4S/R.INSTALL646816d39e2cf/adapt3/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp14ga4S/R.INSTALL646816d39e2cf/adapt3/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-adapt3/00new/adapt3/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adapt3)