• using R Under development (unstable) (2024-10-01 r87205)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.0 (4)     Debian flang-new version 19.1.0 (4)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘abmR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘abmR’ version ‘1.0.10’
• package encoding: UTF-8
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• checking for sufficient/correct file permissions ... OK
• checking whether package ‘abmR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
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• checking R files for syntax errors ... OK
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• checking R code for possible problems ... [54s/69s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) get_ex_data.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-1) get_ex_data.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) get_ex_data.Rd:34-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) get_ex_data.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) tidy_results.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) tidy_results.Rd:30: Lost braces in \itemize; meant \describe ?
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• checking examples ... [21s/27s] ERROR Running examples in ‘abmR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: energyVIZ > ### Title: Creates a plot/table of energySIM() results > ### Aliases: energyVIZ > > ### ** Examples > > > # 1. Define Population and Run energySIM() > > pop1 <- as.species(x=-98.7, y=34.7) > > EX1=energySIM(replicates=2,days=7,env_rast=ex_raster, search_radius=200, + sigma=.1, dest_x=-108.6, dest_y=26.2, mot_x=.9, mot_y=.9, + modeled_species=pop1, + optimum_lo=.8,optimum_hi=.9,init_energy=100, + direction="R",write_results=FALSE,single_rast=TRUE,mortality = TRUE) Direction=R specified--Raster will be ignored > > # 2. Run energyVIZ() on your result > > energyVIZ(EX1,title="Visualizing EnergySIM results",type="plot", aspect_ratio=5/3, + label=TRUE) Warning in geom_map(data = world, map = world, aes_string("long", "lat", :   Ignoring unknown aesthetics: x and y > > energyVIZ(EX1,type="summary_table") Error in `dplyr::mutate()`: ℹ In argument: `stat = as.character(...)`. Caused by error in `glue_data()`: ! is.environment(.envir) is not TRUE Backtrace:      ▆   1. ├─abmR::energyVIZ(EX1, type = "summary_table")   2. │ └─gtsummary::tbl_summary(data$results[, -c(1, 2, 9)])   3. │ ├─base::structure(...)   4. │ ├─base::append(...)   5. │ └─gtsummary::brdg_summary(...)   6. │ ├─dplyr::left_join(...)   7. │ ├─dplyr:::left_join.data.frame(...)   8. │ │ └─dplyr::auto_copy(x, y, copy = copy)   9. │ │ ├─dplyr::same_src(x, y)  10. │ │ └─dplyr:::same_src.data.frame(x, y)  11. │ │ └─base::is.data.frame(y)  12. │ ├─dplyr::bind_rows(...)  13. │ │ └─rlang::list2(...)  14. │ └─gtsummary::pier_summary_continuous(...)  15. │ ├─... %>% ...  16. │ ├─dplyr::bind_rows(...)  17. │ │ └─rlang::list2(...)  18. │ ├─dplyr::group_map(...)  19. │ └─dplyr:::group_map.data.frame(...)  20. │ └─dplyr:::map2(chunks, group_keys, .f, ...)  21. │ └─base::mapply(.f, .x, .y, MoreArgs = list(...), SIMPLIFY = FALSE)  22. │ └─gtsummary (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])  23. │ ├─dplyr::mutate(...)  24. │ └─dplyr:::mutate.data.frame(...)  25. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)  26. │ ├─base::withCallingHandlers(...)  27. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)  28. │ └─mask$eval_all_mutate(quo)  29. │ └─dplyr (local) eval()  30. ├─dplyr::left_join(...)  31. ├─dplyr:::left_join.data.frame(...)  32. │ └─dplyr::auto_copy(x, y, copy = copy)  33. │ ├─dplyr::same_src(x, y)  34. │ └─dplyr:::same_src.data.frame(x, y)  35. │ └─base::is.data.frame(y)  36. ├─glue::glue(...)  37. │ └─glue::glue_data(...)  38. │ └─base::stopifnot(is.environment(.envir))  39. │ └─base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p)))  40. └─dplyr (local) `<fn>`(`<smplErrr>`)  41. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) Execution halted
• checking PDF version of manual ... [5s/7s] OK
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• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE