- using R Under development (unstable) (2025-07-09 r88393)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3+b1)
Debian flang-new version 19.1.7 (3+b1)
- running under: Debian GNU/Linux 13 (trixie)
- using session charset: UTF-8
- checking for file ‘WormTensor/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘WormTensor’ version ‘0.1.1’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/1s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘WormTensor’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s/6s] OK
- checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
- checking whether the package can be unloaded cleanly ... [4s/5s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s/5s] OK
- checking whether the namespace can be unloaded cleanly ... [5s/6s] OK
- checking loading without being on the library search path ... [5s/6s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [21s/28s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [5s/7s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [7s/10s] ERROR
Running ‘testthat.R’ [6s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(WormTensor)
>
> test_check("WormTensor")
trying URL 'https://figshare.com/ndownloader/files/35963780'
trying URL 'https://figshare.com/ndownloader/files/35963780'
trying URL 'https://figshare.com/ndownloader/files/35963777'
trying URL 'https://figshare.com/ndownloader/files/35963780'
trying URL 'https://figshare.com/ndownloader/files/35963780'
trying URL 'https://figshare.com/ndownloader/files/35963780'
[ FAIL 6 | WARN 9 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-as_worm_tensor.R:2:1'): (code run outside of `test_that()`) ────
Error in `download.file("https://figshare.com/ndownloader/files/35963780",
tempfile1)`: cannot open URL 'https://figshare.com/ndownloader/files/35963780'
Backtrace:
▆
1. ├─WormTensor::as_worm_tensor(worm_download()$Ds) at test-as_worm_tensor.R:2:1
2. │ └─WormTensor:::.check_as_worm_tensor(Ds)
3. │ └─base::lapply(...)
4. └─WormTensor::worm_download()
5. └─utils::download.file(...)
── Error ('test-worm_clustering.R:2:1'): (code run outside of `test_that()`) ───
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'worm_membership': cannot open URL 'https://figshare.com/ndownloader/files/35963780'
Backtrace:
▆
1. ├─WormTensor::worm_membership(...) at test-worm_clustering.R:2:1
2. ├─WormTensor::as_worm_tensor(worm_download()$Ds)
3. │ └─WormTensor:::.check_as_worm_tensor(Ds)
4. │ └─base::lapply(...)
5. ├─WormTensor::worm_download()
6. │ └─utils::download.file(...)
7. └─base::.handleSimpleError(...)
8. └─base (local) h(simpleError(msg, call))
── Error ('test-worm_download.R:7:1'): (code run outside of `test_that()`) ─────
Error in `download.file("https://figshare.com/ndownloader/files/35963777",
tempfile1)`: cannot open URL 'https://figshare.com/ndownloader/files/35963777'
Backtrace:
▆
1. └─WormTensor::worm_download("Euclid") at test-worm_download.R:7:1
2. └─utils::download.file(...)
── Error ('test-worm_evaluate.R:2:1'): (code run outside of `test_that()`) ─────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'worm_clustering': error in evaluating the argument 'object' in selecting a method for function 'worm_membership': cannot open URL 'https://figshare.com/ndownloader/files/35963780'
Backtrace:
▆
1. ├─WormTensor::worm_clustering(...) at test-worm_evaluate.R:2:1
2. ├─WormTensor::worm_membership(...)
3. ├─WormTensor::as_worm_tensor(worm_download()$Ds)
4. │ └─WormTensor:::.check_as_worm_tensor(Ds)
5. │ └─base::lapply(...)
6. ├─WormTensor::worm_download()
7. │ └─utils::download.file(...)
8. ├─base::.handleSimpleError(...)
9. │ └─base (local) h(simpleError(msg, call))
10. └─base::.handleSimpleError(...)
11. └─base (local) h(simpleError(msg, call))
── Error ('test-worm_membership.R:2:1'): (code run outside of `test_that()`) ───
Error in `download.file("https://figshare.com/ndownloader/files/35963780",
tempfile1)`: cannot open URL 'https://figshare.com/ndownloader/files/35963780'
Backtrace:
▆
1. ├─WormTensor::as_worm_tensor(worm_download()$Ds) at test-worm_membership.R:2:1
2. │ └─WormTensor:::.check_as_worm_tensor(Ds)
3. │ └─base::lapply(...)
4. └─WormTensor::worm_download()
5. └─utils::download.file(...)
── Error ('test-worm_visualize.R:5:1'): (code run outside of `test_that()`) ────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'worm_visualize': error in evaluating the argument 'object' in selecting a method for function 'worm_evaluate': error in evaluating the argument 'object' in selecting a method for function 'worm_clustering': error in evaluating the argument 'object' in selecting a method for function 'worm_membership': cannot open URL 'https://figshare.com/ndownloader/files/35963780'
Backtrace:
▆
1. ├─WormTensor::worm_visualize(...) at test-worm_visualize.R:5:1
2. ├─WormTensor::worm_evaluate(...)
3. ├─WormTensor::worm_clustering(...)
4. ├─WormTensor::worm_membership(...)
5. ├─WormTensor::as_worm_tensor(worm_download()$Ds)
6. │ └─WormTensor:::.check_as_worm_tensor(Ds)
7. │ └─base::lapply(...)
8. ├─WormTensor::worm_download()
9. │ └─utils::download.file(...)
10. ├─base::.handleSimpleError(...)
11. │ └─base (local) h(simpleError(msg, call))
12. ├─base::.handleSimpleError(...)
13. │ └─base (local) h(simpleError(msg, call))
14. ├─base::.handleSimpleError(...)
15. │ └─base (local) h(simpleError(msg, call))
16. └─base::.handleSimpleError(...)
17. └─base (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 9 | SKIP 0 | PASS 31 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [5s/7s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘WormTensor.Rmd’ using rmarkdown
trying URL 'https://figshare.com/ndownloader/files/35963780'
Quitting from WormTensor.Rmd:38-40 [worm_download]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://figshare.com/ndownloader/files/35963780'
---
Backtrace:
▆
1. └─WormTensor::worm_download()
2. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'WormTensor.Rmd' failed with diagnostics:
cannot open URL 'https://figshare.com/ndownloader/files/35963780'
--- failed re-building ‘WormTensor.Rmd’
SUMMARY: processing the following file failed:
‘WormTensor.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [4s/6s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 ERRORs