Check results for 'WormTensor'

using R Under development (unstable) (2025-07-09 r88393)
using platform: x86_64-pc-linux-gnu
R was compiled by Debian clang version 19.1.7 (3+b1) Debian flang-new version 19.1.7 (3+b1)
running under: Debian GNU/Linux 13 (trixie)
using session charset: UTF-8
checking for file ‘WormTensor/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘WormTensor’ version ‘0.1.1’
package encoding: UTF-8
checking CRAN incoming feasibility ... [1s/1s] OK
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checking for sufficient/correct file permissions ... OK
checking whether package ‘WormTensor’ can be installed ... OK See the install log for details.
checking package directory ... OK
checking for future file timestamps ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
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checking R files for syntax errors ... OK
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checking for unstated dependencies in examples ... OK
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checking files in ‘vignettes’ ... OK
checking examples ... [5s/7s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [7s/10s] ERROR Running ‘testthat.R’ [6s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(WormTensor) > > test_check("WormTensor") trying URL 'https://figshare.com/ndownloader/files/35963780' trying URL 'https://figshare.com/ndownloader/files/35963780' trying URL 'https://figshare.com/ndownloader/files/35963777' trying URL 'https://figshare.com/ndownloader/files/35963780' trying URL 'https://figshare.com/ndownloader/files/35963780' trying URL 'https://figshare.com/ndownloader/files/35963780' [ FAIL 6 | WARN 9 | SKIP 0 | PASS 31 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-as_worm_tensor.R:2:1'): (code run outside of `test_that()`) ──── Error in `download.file("https://figshare.com/ndownloader/files/35963780", tempfile1)`: cannot open URL 'https://figshare.com/ndownloader/files/35963780' Backtrace: ▆ 1. ├─WormTensor::as_worm_tensor(worm_download()$Ds) at test-as_worm_tensor.R:2:1 2. │ └─WormTensor:::.check_as_worm_tensor(Ds) 3. │ └─base::lapply(...) 4. └─WormTensor::worm_download() 5. └─utils::download.file(...) ── Error ('test-worm_clustering.R:2:1'): (code run outside of `test_that()`) ─── Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'worm_membership': cannot open URL 'https://figshare.com/ndownloader/files/35963780' Backtrace: ▆ 1. ├─WormTensor::worm_membership(...) at test-worm_clustering.R:2:1 2. ├─WormTensor::as_worm_tensor(worm_download()$Ds) 3. │ └─WormTensor:::.check_as_worm_tensor(Ds) 4. │ └─base::lapply(...) 5. ├─WormTensor::worm_download() 6. │ └─utils::download.file(...) 7. └─base::.handleSimpleError(...) 8. └─base (local) h(simpleError(msg, call)) ── Error ('test-worm_download.R:7:1'): (code run outside of `test_that()`) ───── Error in `download.file("https://figshare.com/ndownloader/files/35963777", tempfile1)`: cannot open URL 'https://figshare.com/ndownloader/files/35963777' Backtrace: ▆ 1. └─WormTensor::worm_download("Euclid") at test-worm_download.R:7:1 2. └─utils::download.file(...) ── Error ('test-worm_evaluate.R:2:1'): (code run outside of `test_that()`) ───── Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'worm_clustering': error in evaluating the argument 'object' in selecting a method for function 'worm_membership': cannot open URL 'https://figshare.com/ndownloader/files/35963780' Backtrace: ▆ 1. ├─WormTensor::worm_clustering(...) at test-worm_evaluate.R:2:1 2. ├─WormTensor::worm_membership(...) 3. ├─WormTensor::as_worm_tensor(worm_download()$Ds) 4. │ └─WormTensor:::.check_as_worm_tensor(Ds) 5. │ └─base::lapply(...) 6. ├─WormTensor::worm_download() 7. │ └─utils::download.file(...) 8. ├─base::.handleSimpleError(...) 9. │ └─base (local) h(simpleError(msg, call)) 10. └─base::.handleSimpleError(...) 11. └─base (local) h(simpleError(msg, call)) ── Error ('test-worm_membership.R:2:1'): (code run outside of `test_that()`) ─── Error in `download.file("https://figshare.com/ndownloader/files/35963780", tempfile1)`: cannot open URL 'https://figshare.com/ndownloader/files/35963780' Backtrace: ▆ 1. ├─WormTensor::as_worm_tensor(worm_download()$Ds) at test-worm_membership.R:2:1 2. │ └─WormTensor:::.check_as_worm_tensor(Ds) 3. │ └─base::lapply(...) 4. └─WormTensor::worm_download() 5. └─utils::download.file(...) ── Error ('test-worm_visualize.R:5:1'): (code run outside of `test_that()`) ──── Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'worm_visualize': error in evaluating the argument 'object' in selecting a method for function 'worm_evaluate': error in evaluating the argument 'object' in selecting a method for function 'worm_clustering': error in evaluating the argument 'object' in selecting a method for function 'worm_membership': cannot open URL 'https://figshare.com/ndownloader/files/35963780' Backtrace: ▆ 1. ├─WormTensor::worm_visualize(...) at test-worm_visualize.R:5:1 2. ├─WormTensor::worm_evaluate(...) 3. ├─WormTensor::worm_clustering(...) 4. ├─WormTensor::worm_membership(...) 5. ├─WormTensor::as_worm_tensor(worm_download()$Ds) 6. │ └─WormTensor:::.check_as_worm_tensor(Ds) 7. │ └─base::lapply(...) 8. ├─WormTensor::worm_download() 9. │ └─utils::download.file(...) 10. ├─base::.handleSimpleError(...) 11. │ └─base (local) h(simpleError(msg, call)) 12. ├─base::.handleSimpleError(...) 13. │ └─base (local) h(simpleError(msg, call)) 14. ├─base::.handleSimpleError(...) 15. │ └─base (local) h(simpleError(msg, call)) 16. └─base::.handleSimpleError(...) 17. └─base (local) h(simpleError(msg, call)) [ FAIL 6 | WARN 9 | SKIP 0 | PASS 31 ] Error: Test failures Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [5s/7s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘WormTensor.Rmd’ using rmarkdown trying URL 'https://figshare.com/ndownloader/files/35963780' Quitting from WormTensor.Rmd:38-40 [worm_download] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `download.file()`: ! cannot open URL 'https://figshare.com/ndownloader/files/35963780' --- Backtrace: ▆ 1. └─WormTensor::worm_download() 2. └─utils::download.file(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'WormTensor.Rmd' failed with diagnostics: cannot open URL 'https://figshare.com/ndownloader/files/35963780' --- failed re-building ‘WormTensor.Rmd’ SUMMARY: processing the following file failed: ‘WormTensor.Rmd’ Error: Vignette re-building failed. Execution halted
checking PDF version of manual ... [4s/6s] OK
checking HTML version of manual ... [0s/1s] OK
checking for non-standard things in the check directory ... OK
DONE

Status: 2 ERRORs