• using R Under development (unstable) (2025-06-25 r88360)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b1)     Debian flang-new version 19.1.7 (3+b1)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘SCBiclust/DESCRIPTION’ ... OK
• this is package ‘SCBiclust’ version ‘1.0.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [0s/0s] NOTE Maintainer: ‘Erika S. Helgeson <helge@umn.edu>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = c("Erika", "S."),                       family = "Helgeson",                       role = c("aut", "cre"),                       email = "helge@umn.edu"),                person(given = "Qian",                       family = "Liu",                       role = "aut"),                person(given = "Guanhua",                       family = "Chen",                       role = "aut"),                person(given = c("Michael", "R."),                       family = "Kosorok",                       role = "aut"),                person(given = "Eric",                       family = "Bair",                       role = "aut")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘SCBiclust’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/9s] OK
• checking Rd files ... [0s/0s] NOTE checkRd: (-1) PermBiclust.beta.ks.Rd:29: Lost braces; missing escapes or markup?     29 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.}        | ^ checkRd: (-1) PermBiclust.beta.ks.Rd:30: Lost braces     30 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals}        | ^ checkRd: (-1) PermBiclust.sigclust.Rd:32: Lost braces; missing escapes or markup?     32 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.}        | ^ checkRd: (-1) PermBiclust.sigclust.Rd:33: Lost braces     33 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals}        | ^ checkRd: (-1) PermBiclust.sigclust_stop.Rd:35: Lost braces; missing escapes or markup?     35 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.}        | ^ checkRd: (-1) PermBiclust.sigclust_stop.Rd:36: Lost braces     36 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   PermBiclust.beta.ks.Rd: KMeansSparseCluster   PermBiclust.sigclust.Rd: sigclust, KMeansSparseCluster   PermBiclust.sigclust_stop.Rd: sigclust, KMeansSparseCluster   PermHclust.sigclust.Rd: HierarchicalSparseCluster, sigclust Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [15s/19s] OK Examples with CPU (user + system) or elapsed time > 5s                           user system elapsed VarPermBiclust.chisqdiff 5.916 0.011 6.795
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 NOTEs