* installing to library '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages'
* installing *source* package 'Rmpfr' ...
** package 'Rmpfr' successfully unpacked and MD5 sums checked
** using staged installation
'config' variable 'CPP' is deprecated
checking for gcc... clang-9
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang-9 accepts -g... yes
checking for clang-9 option to accept ISO C89... none needed
checking how to run the C preprocessor... clang-9 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking mpfr.h usability... yes
checking mpfr.h presence... yes
checking for mpfr.h... yes
checking gmp.h usability... yes
checking gmp.h presence... yes
checking for gmp.h... yes
checking for __gmpz_init in -lgmp... yes
checking for mpfr_init in -lmpfr... yes
checking for mpfr_digamma in -lmpfr... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/tmp/Rtmp1O6TG8/R.INSTALL656a4d4582ff/Rmpfr/src'
clang-9 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c Ops.c -o Ops.o
clang-9 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c Summary.c -o Summary.o
clang-9 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c convert.c -o convert.o
clang-9 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c init.c -o init.o
clang-9 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c utils.c -o utils.o
clang-9 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o Rmpfr.so Ops.o Summary.o convert.o init.o utils.o -lmpfr -lgmp -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp1O6TG8/R.INSTALL656a4d4582ff/Rmpfr/src'
make[1]: Entering directory '/tmp/Rtmp1O6TG8/R.INSTALL656a4d4582ff/Rmpfr/src'
make[1]: Leaving directory '/tmp/Rtmp1O6TG8/R.INSTALL656a4d4582ff/Rmpfr/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-Rmpfr/00new/Rmpfr/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
From .checkSubclasses(): subclass "logical" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "integer" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "numeric" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "complex" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "raw" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "character" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "factor" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "double" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "signature" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "className" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "ObjectsWithPackage" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "ordered" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "factor" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "ordered" of class "atomicVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "array" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "matrix" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "mts" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "logical" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "integer" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "numeric" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "complex" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "raw" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "character" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "mts" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "factor" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "double" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "signature" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "className" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "ObjectsWithPackage" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "ordered" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "factor" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "ordered" of class "array_or_vector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "logical" of class "numericVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "integer" of class "numericVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "numeric" of class "numericVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "factor" of class "numericVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "double" of class "numericVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "ordered" of class "numericVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "factor" of class "numericVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
From .checkSubclasses(): subclass "ordered" of class "numericVector" is not local and is not updated for new inheritance information currently; 
[where=<environment: namespace:Rmpfr>, where2=<environment: namespace:Rmpfr>]
Creating a generic function for 'factorial' from package 'base' in package 'Rmpfr'
Creating a generic function for 'diag' from package 'base' in package 'Rmpfr'
Creating a generic function for 'diag<-' from package 'base' in package 'Rmpfr'
Creating a new generic function for 'cbind' in package 'Rmpfr'
Creating a new generic function for 'rbind' in package 'Rmpfr'
Creating a generic function for 'colSums' from package 'base' in package 'Rmpfr'
Creating a generic function for 'colMeans' from package 'base' in package 'Rmpfr'
Creating a generic function for 'rowSums' from package 'base' in package 'Rmpfr'
Creating a generic function for 'rowMeans' from package 'base' in package 'Rmpfr'
Creating a generic function for 'norm' from package 'base' in package 'Rmpfr'
in method for 'show' with signature '"integrateR"': no definition for class "integrateR"
Creating a new generic function for 'pmin' in package 'Rmpfr'
Creating a new generic function for 'pmax' in package 'Rmpfr'
Creating a generic function for 'atan2' from package 'base' in package 'Rmpfr'
Creating a generic function for 'beta' from package 'base' in package 'Rmpfr'
Creating a generic function for 'lbeta' from package 'base' in package 'Rmpfr'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rmpfr)