* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘RMCC’ ...
** package ‘RMCC’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.6 (1)’
using C++11
make[1]: Entering directory '/tmp/RtmpoxDVqH/R.INSTALL3d58a87030509d/RMCC/src'
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c Algorithm.cpp -o Algorithm.o
In file included from Algorithm.cpp:26:
In file included from ./IUnclassifiedPoints.h:18:
In file included from ./IPointVector.h:19:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages]
   10 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
   23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
      |                                     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
   24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
      |                                  ^
<scratch space>:189:2: note: expanded from here
  189 |  message("This header is deprecated. Use " "<iterator>" " instead.")
      |  ^
In file included from Algorithm.cpp:21:
./Algorithm.h:37:12: warning: private field 'writeNongroundPts_' is not used [-Wunused-private-field]
   37 |       bool writeNongroundPts_;
      |            ^
./Algorithm.h:38:12: warning: private field 'writeRasterSurfaces_' is not used [-Wunused-private-field]
   38 |       bool writeRasterSurfaces_;
      |            ^
3 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c CoordinateInterval.cpp -o CoordinateInterval.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c DisjointRegions.cpp -o DisjointRegions.o
In file included from DisjointRegions.cpp:24:
In file included from ./IPointVector.h:19:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages]
   10 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
   23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
      |                                     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
   24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
      |                                  ^
<scratch space>:30:2: note: expanded from here
   30 |  message("This header is deprecated. Use " "<iterator>" " instead.")
      |  ^
1 warning generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c DuplicatePoints.cpp -o DuplicatePoints.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c Geometry3D.cpp -o Geometry3D.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c GridBase.cpp -o GridBase.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c InterpolationRegion.cpp -o InterpolationRegion.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c LocaleUtilities.cpp -o LocaleUtilities.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c PointVector.cpp -o PointVector.o
In file included from PointVector.cpp:17:
In file included from ./PointVector.h:22:
In file included from ./IPointVector.h:19:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages]
   10 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
   23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
      |                                     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
   24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
      |                                  ^
<scratch space>:349:2: note: expanded from here
  349 |  message("This header is deprecated. Use " "<iterator>" " instead.")
      |  ^
1 warning generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c R_MCC.cpp -o R_MCC.o
In file included from R_MCC.cpp:5:
In file included from ./PointVector.h:22:
In file included from ./IPointVector.h:19:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages]
   10 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
   23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
      |                                     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
   24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
      |                                  ^
<scratch space>:567:2: note: expanded from here
  567 |  message("This header is deprecated. Use " "<iterator>" " instead.")
      |  ^
1 warning generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c RasterSurface.cpp -o RasterSurface.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c RcppExports.cpp -o RcppExports.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c RegularizedSpline.cpp -o RegularizedSpline.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c StackedPoints.cpp -o StackedPoints.o
In file included from StackedPoints.cpp:19:
In file included from ./IUnclassifiedPoints.h:18:
In file included from ./IPointVector.h:19:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages]
   10 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
   23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
      |                                     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
   24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
      |                                  ^
<scratch space>:332:2: note: expanded from here
  332 |  message("This header is deprecated. Use " "<iterator>" " instead.")
      |  ^
1 warning generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c SurfaceInterpolation.cpp -o SurfaceInterpolation.o
In file included from SurfaceInterpolation.cpp:21:
In file included from ./IPointVector.h:19:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages]
   10 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
   23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
      |                                     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
   24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
      |                                  ^
<scratch space>:30:2: note: expanded from here
   30 |  message("This header is deprecated. Use " "<iterator>" " instead.")
      |  ^
SurfaceInterpolation.cpp:109:9: warning: variable 'nSplinesComputed' set but not used [-Wunused-but-set-variable]
  109 |     int nSplinesComputed = 0;
      |         ^
2 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c UnclassifiedPoints.cpp -o UnclassifiedPoints.o
In file included from UnclassifiedPoints.cpp:19:
In file included from ./UnclassifiedPoints.h:20:
In file included from ./IUnclassifiedPoints.h:18:
In file included from ./IPointVector.h:19:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages]
   10 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
   23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
      |                                     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
   24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
      |                                  ^
<scratch space>:262:2: note: expanded from here
  262 |  message("This header is deprecated. Use " "<iterator>" " instead.")
      |  ^
1 warning generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c tpsdemo/spline.cpp -o tpsdemo/spline.o
clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o RMCC.so ./Algorithm.o ./CoordinateInterval.o ./DisjointRegions.o ./DuplicatePoints.o ./Geometry3D.o ./GridBase.o ./InterpolationRegion.o ./LocaleUtilities.o ./PointVector.o ./R_MCC.o ./RasterSurface.o ./RcppExports.o ./RegularizedSpline.o ./StackedPoints.o ./SurfaceInterpolation.o ./UnclassifiedPoints.o tpsdemo/spline.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpoxDVqH/R.INSTALL3d58a87030509d/RMCC/src'
make[1]: Entering directory '/tmp/RtmpoxDVqH/R.INSTALL3d58a87030509d/RMCC/src'
make[1]: Leaving directory '/tmp/RtmpoxDVqH/R.INSTALL3d58a87030509d/RMCC/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-RMCC/00new/RMCC/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘RMCC’ as ‘RMCC_0.1.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (RMCC)