- using R Under development (unstable) (2024-12-07 r87428)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.4 (1)
Debian flang-new version 19.1.4 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘R.utils/DESCRIPTION’ ... OK
- this is package ‘R.utils’ version ‘2.12.3’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘R.utils’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/1s] OK
- checking whether startup messages can be suppressed ... [0s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [38s/48s] OK
- checking Rd files ... [3s/3s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
TimeoutException.Rd: Exception
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [5s/13s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [52s/85s] OK
Running ‘Arguments-FILES.R’ [1s/1s]
Running ‘FileProgressBar.R’ [1s/2s]
Running ‘GString.R’ [0s/1s]
Running ‘Java.R’ [1s/1s]
Running ‘MultiVerbose.R’ [0s/1s]
Running ‘NullVerbose.R’ [0s/1s]
Running ‘Options.R’ [0s/1s]
Running ‘ProgressBar.R’ [1s/1s]
Running ‘Settings.R’ [0s/1s]
Running ‘System.R’ [0s/1s]
Running ‘TextStatusBar.R’ [1s/1s]
Running ‘VComments.R’ [0s/1s]
Running ‘Verbose.R’ [0s/1s]
Running ‘absolute-relative-paths.R’ [1s/1s]
Running ‘attachLocally.R’ [0s/1s]
Running ‘callHooks.R’ [0s/1s]
Running ‘capitalize.R’ [0s/1s]
Running ‘captureOutput.R’ [0s/1s]
Running ‘cmdArgs.R’ [0s/1s]
Running ‘colClasses.R’ [0s/0s]
Running ‘commandArgs.R’ [1s/1s]
Running ‘compressFile.R’ [1s/1s]
Running ‘compressPDF.R’ [3s/3s]
Running ‘copyRenameFile.R’ [1s/1s]
Running ‘countLines.R’ [1s/1s]
Running ‘cout.R’ [0s/1s]
Running ‘createFileAtomically.R’ [1s/1s]
Running ‘createLink.R’ [1s/1s]
Running ‘dataFrame.R’ [0s/1s]
Running ‘dimNA.R’ [0s/1s]
Running ‘displayCode.R’ [0s/1s]
Running ‘doCall.R’ [0s/1s]
Running ‘eget.R’ [0s/1s]
Running ‘egsub.R’ [0s/0s]
Running ‘env.R’ [0s/1s]
Running ‘extract.array.R’ [0s/1s]
Running ‘fileAccess.R’ [0s/1s]
Running ‘filePath.R’ [0s/1s]
Running ‘findFiles.R’ [1s/1s]
Running ‘findSourceTraceback.R’ [0s/1s]
Running ‘gcDLLs.R’ [0s/1s]
Running ‘gcat.R’ [0s/1s]
Running ‘getOption.R’ [0s/0s]
Running ‘getParent.R’ [0s/0s]
Running ‘hpaste.R’ [0s/1s]
Running ‘insert.R’ [0s/0s]
Running ‘intToHex.R’ [0s/1s]
Running ‘isPackageLoaded.R’ [0s/1s]
Running ‘isReplicated.R’ [1s/1s]
Running ‘isUrl.R’ [0s/1s]
Running ‘isZero.R’ [0s/0s]
Running ‘listDirectory.R’ [1s/1s]
Running ‘loadObject.R’ [0s/1s]
Running ‘loadToEnv.R’ [0s/1s]
Running ‘mkdirs.R’ [1s/1s]
Running ‘mout.R’ [0s/1s]
Running ‘mpager.R’ [0s/1s]
Running ‘nullfile.R’ [0s/1s]
Running ‘parseRepos.R’ [0s/1s]
Running ‘pushBackupFile.R’ [0s/1s]
Running ‘pushTemporaryFile.R’ [0s/1s]
Running ‘queryRCmdCheck.R’ [0s/0s]
Running ‘readBinFragments.R’ [0s/1s]
Running ‘readWindowsShellLink.R’ [0s/1s]
Running ‘readWindowsShortcut.R’ [0s/1s]
Running ‘resample.R’ [0s/1s]
Running ‘seqToHumanReadable.R’ [0s/1s]
Running ‘seqToIntervals.R’ [0s/1s]
Running ‘sourceDirectory.R’ [1s/3s]
Running ‘sourceTo.R’ [0s/1s]
Running ‘splitByPattern.R’ [0s/1s]
Running ‘subplots.R’ [0s/1s]
Running ‘symlinks,dirs.R’ [1s/1s]
Running ‘symlinks,files.R’ [1s/1s]
Running ‘systemR.R’ [1s/1s]
Running ‘tempvar.R’ [0s/0s]
Running ‘tmpfile.R’ [0s/1s]
Running ‘toCamelCase.R’ [0s/1s]
Running ‘touchFile.R’ [0s/2s]
Running ‘use.R’ [1s/1s]
Running ‘useRepos.R’ [0s/0s]
Running ‘whichVector.R’ [0s/1s]
Running ‘withCapture.R’ [0s/1s]
Running ‘withLocale.R’ [0s/0s]
Running ‘withOptions.R’ [0s/1s]
Running ‘withRepos.R’ [0s/1s]
Running ‘withSeed.R’ [0s/0s]
Running ‘withSink.R’ [1s/1s]
Running ‘withTimeout.R’ [1s/10s]
Running ‘wrap.array.R’ [0s/1s]
Running ‘writeDataFrame.R’ [1s/1s]
Running ‘zzz_finalizer_crash.R’ [6s/8s]
- checking PDF version of manual ... [18s/27s] OK
- checking HTML version of manual ... [11s/21s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE