- using R Under development (unstable) (2025-07-27 r88459)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3+b1)
Debian flang-new version 19.1.7 (3+b1)
- running under: Debian GNU/Linux 13 (trixie)
- using session charset: UTF-8
- checking for file ‘ProjectTemplate/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ProjectTemplate’ version ‘0.11.0’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘ProjectTemplate’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s/14s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [41s/89s] ERROR
Running ‘run-all.R’ [21s/47s]
Running ‘testthat.R’ [20s/42s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project10ca2266d8dbd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca222e2797e5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca2231faa3eb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project10ca2231faa3eb
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project10ca2231faa3eb
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca226aa772dc
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project10ca224b8cbba4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project10ca224b8cbba4
Clearing cache for project: test_project10ca222e660381
Objects to clear from memory: xxx
Project name: test_project10ca222e660381
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project10ca226249c0bd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca226249c0bd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project10ca2252bcae10
Project name: test_project10ca2264bfa386
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca2236d76e85
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project10ca2218e6b5bf is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project10ca2218e6b5bf is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project210ca224ad876cf is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file10ca2228b61260 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project10ca22256f901d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project10ca22518d3599
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project10ca222ad5826e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca222ad5826e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca2249d132da
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca2249d132da
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca222c3914a9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca222c3914a9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca2255e48335
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca22647313eb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca22647313eb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca2228eb6237
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca2228eb6237
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca221555c1a3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca221555c1a3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca2219c873ea
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca2219c873ea
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project10ca22ffd439
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca22ffd439
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project10ca227e1b0efc
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project10ca2239042ae
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca2270ad6621
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project10ca222f605ef1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project110ad743f2860
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad775bfee70
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad75912d309
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project110ad75912d309
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project110ad75912d309
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad723bd95e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project110ad75a4801ec
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project110ad75a4801ec
Clearing cache for project: test_project110ad749ab2f29
Objects to clear from memory: xxx
Project name: test_project110ad749ab2f29
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project110ad765981455
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad765981455
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project110ad74852584d
Project name: test_project110ad736f5026b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad72c787cc8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project110ad7132e111d is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project110ad7132e111d is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2110ad73421977e is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file110ad768c92a37 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project110ad71cc1ec0d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project110ad784497e0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project110ad710e726d3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad710e726d3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad7460b1432
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad7460b1432
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad7b63e07
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad7b63e07
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad71a4ed5bb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad71ac4bd1d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad71ac4bd1d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad752ac7b79
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad752ac7b79
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad74cee4e24
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad74cee4e24
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad742a12daa
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad742a12daa
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project110ad77e78f64e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad77e78f64e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project110ad7295ab698
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project110ad732d0dab6
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad71fa4d70f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project110ad73fbe8770
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR