• using R Under development (unstable) (2025-07-27 r88459)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b1)     Debian flang-new version 19.1.7 (3+b1)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘ProjectTemplate/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ProjectTemplate’ version ‘0.11.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ProjectTemplate’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/14s] OK
• checking Rd files ... [1s/2s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [41s/89s] ERROR   Running ‘run-all.R’ [21s/47s]   Running ‘testthat.R’ [20s/42s] Running the tests in ‘tests/run-all.R’ failed. Complete output:   > library(testthat)   >   > test_check("ProjectTemplate")   Loading required package: ProjectTemplate   Loading required package: digest   Loading required package: tibble   Project name: test_project10ca2266d8dbd   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca222e2797e5   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca2231faa3eb   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project10ca2231faa3eb   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData   dummy 999   Configuration for project: test_project10ca2231faa3eb   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData      Additional custom config present for this project:   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca226aa772dc   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: foo.reader.R    Running helper script: helpers.R   Autoloading data    Loading data set: example     Creating cache entry from global environment: example   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Following objects not in memory:   Objects to clear from memory: xxxx   Project name: test_project10ca224b8cbba4   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: helper.function project.info   Clearing cache for project: test_project10ca224b8cbba4   Clearing cache for project: test_project10ca222e660381   Objects to clear from memory: xxx   Project name: test_project10ca222e660381   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from CODE: xxxx   Objects to clear from memory: config project.info   Objects to clear from memory: project.info   Objects to clear from memory: yyy   Following objects not in memory: xxx   Following objects not in memory: xxx   Variables not cleared: config   No objects to clear   Objects to clear from memory: .yyy helper.function project.info   Project name: test_project10ca226249c0bd   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca226249c0bd   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project10ca2252bcae10   Project name: test_project10ca2264bfa386   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca2236d76e85   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!   Current Directory: test_project10ca2218e6b5bf is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project10ca2218e6b5bf is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project210ca224ad876cf is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Objects to clear from memory: config helper.function project.info   No objects to clear   Objects to clear from memory: config file10ca2228b61260 helper.function project.info     Creating cache entry from CODE: test_data   Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run load.project()      Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run clear.cache() again.      Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run cache() again.      Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run reload.project() again.      Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run test.project() again.      Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run stub.tests() again.      Current Directory: test_project10ca224136753c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run project.config()      Project name: test_project10ca22256f901d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: Thumbs   Loading required namespace: RSQLite     Creating cache entry from global environment: var_to_cache   Loading required package: data.table        01-test_data.py start   01-test_data.py finish        02-test_data.py start   ['1', '20']   ['2', '30']   ['3', '40']   Python data exists in the environment   y   02-test_data.py finish   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file contained unused entries which have been   removed. The unused entries are:   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] TRUE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Project name: test_project10ca22518d3599   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: .Random.seed config helper.function project.info   Project name: test_project10ca222ad5826e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca222ad5826e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca2249d132da   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca2249d132da   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca222c3914a9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca222c3914a9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca2255e48335   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca22647313eb   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca22647313eb   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca2228eb6237   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca2228eb6237   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca221555c1a3   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca221555c1a3   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca2219c873ea   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca2219c873ea   Loading project configuration   Objects to clear from memory: config helper.function project.info   Project name: test_project10ca22ffd439   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca22ffd439   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Loading required package: qs   qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103     Creating cache entry from global environment: cache.qs     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data     Loading table: example_30a     Loading table: example_30b     Loading table: example_31a     Loading table: example_31b     Loading table: example_28   re-encoding from CP1252   re-encoding from CP1252   Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22   Objects to clear from memory: config helper.function project.info   Items in cache will not be cleared   Use reload.project(reset=TRUE) to clear cache also   Objects to clear from memory: helper.function project.info z   Reloading Project ...   Project name: test_project10ca227e1b0efc   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading cached data set: z   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info x y z   Project name: test_project10ca2239042ae   Loading project configuration   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca2270ad6621   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project10ca222f605ef1   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: file_not_in_full_template    Translating data.frame to tibble: file_not_in_full_template     Creating cache entry from global environment: file_not_in_full_template   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   [1] FALSE   [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──   `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.      [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]   Error: Test failures   Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(ProjectTemplate)   Loading required package: digest   Loading required package: tibble   >   > test_check("ProjectTemplate")   Project name: test_project110ad743f2860   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad775bfee70   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad75912d309   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project110ad75912d309   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData   dummy 999   Configuration for project: test_project110ad75912d309   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData      Additional custom config present for this project:   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad723bd95e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: foo.reader.R    Running helper script: helpers.R   Autoloading data    Loading data set: example     Creating cache entry from global environment: example   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Following objects not in memory:   Objects to clear from memory: xxxx   Project name: test_project110ad75a4801ec   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: helper.function project.info   Clearing cache for project: test_project110ad75a4801ec   Clearing cache for project: test_project110ad749ab2f29   Objects to clear from memory: xxx   Project name: test_project110ad749ab2f29   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from CODE: xxxx   Objects to clear from memory: config project.info   Objects to clear from memory: project.info   Objects to clear from memory: yyy   Following objects not in memory: xxx   Following objects not in memory: xxx   Variables not cleared: config   No objects to clear   Objects to clear from memory: .yyy helper.function project.info   Project name: test_project110ad765981455   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad765981455   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project110ad74852584d   Project name: test_project110ad736f5026b   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad72c787cc8   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!   Current Directory: test_project110ad7132e111d is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project110ad7132e111d is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project2110ad73421977e is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Objects to clear from memory: config helper.function project.info   No objects to clear   Objects to clear from memory: config file110ad768c92a37 helper.function project.info     Creating cache entry from CODE: test_data   Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run load.project()      Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run clear.cache() again.      Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run cache() again.      Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run reload.project() again.      Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run test.project() again.      Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run stub.tests() again.      Current Directory: test_project110ad74d52df40 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run project.config()      Project name: test_project110ad71cc1ec0d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: Thumbs   Loading required namespace: RSQLite     Creating cache entry from global environment: var_to_cache   Loading required package: data.table        01-test_data.py start   01-test_data.py finish        02-test_data.py start   ['1', '20']   ['2', '30']   ['3', '40']   Python data exists in the environment   y   02-test_data.py finish   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file contained unused entries which have been   removed. The unused entries are:   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] TRUE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Project name: test_project110ad784497e0   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: .Random.seed config helper.function project.info   Project name: test_project110ad710e726d3   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad710e726d3   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad7460b1432   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad7460b1432   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad7b63e07   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad7b63e07   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad71a4ed5bb   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad71ac4bd1d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad71ac4bd1d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad752ac7b79   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad752ac7b79   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad74cee4e24   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad74cee4e24   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad742a12daa   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad742a12daa   Loading project configuration   Objects to clear from memory: config helper.function project.info   Project name: test_project110ad77e78f64e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad77e78f64e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Loading required package: qs   qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103     Creating cache entry from global environment: cache.qs     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data     Loading table: example_30a     Loading table: example_30b     Loading table: example_31a     Loading table: example_31b     Loading table: example_28   re-encoding from CP1252   re-encoding from CP1252   Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22   Objects to clear from memory: config helper.function project.info   Items in cache will not be cleared   Use reload.project(reset=TRUE) to clear cache also   Objects to clear from memory: helper.function project.info z   Reloading Project ...   Project name: test_project110ad7295ab698   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading cached data set: z   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info x y z   Project name: test_project110ad732d0dab6   Loading project configuration   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad71fa4d70f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project110ad73fbe8770   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: file_not_in_full_template    Translating data.frame to tibble: file_not_in_full_template     Creating cache entry from global environment: file_not_in_full_template   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   [1] FALSE   [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──   `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.      [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR