* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PhotoGEA.Rcheck’
* using R Under development (unstable) (2025-07-15 r88411)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3+b1)
    Debian flang-new version 19.1.7 (3+b1)
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘PhotoGEA/DESCRIPTION’ ... OK
* this is package ‘PhotoGEA’ version ‘1.3.3’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PhotoGEA’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/PhotoGEA-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [27s/31s] OK
* checking Rd files ... [3s/4s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [149s/182s] OK
Examples with CPU (user + system) or elapsed time > 5s
                                 user system elapsed
confidence_intervals_c3_aci     8.395  0.004   9.172
confidence_intervals_c4_aci     7.440  0.055   8.371
fit_c3_variable_j               7.470  0.016   9.467
initial_guess_c3_variable_j     6.692  0.011   8.566
fit_c3_aci                      6.571  0.024   7.273
fit_c4_aci                      5.284  0.024   6.265
calculate_c3_limitations_grassi 4.788  0.015   5.528
plot_c3_aci_fit                 4.611  0.011   5.955
calculate_c3_limitations_warren 4.580  0.019   6.226
initial_guess_c4_aci            4.308  0.142   5.925
process_tdl_cycle_erml          4.418  0.008   6.574
plot_c4_aci_fit                 4.378  0.020   5.597
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [195s/226s] OK
  Running ‘testthat.R’ [194s/226s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [51s/59s] OK
* checking PDF version of manual ... [17s/23s] OK
* checking HTML version of manual ... [12s/18s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK