- using R Under development (unstable) (2025-11-23 r89052)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 21.1.5 (1)
Debian flang version 21.1.5 (1)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘PhotoGEA/DESCRIPTION’ ... OK
- this is package ‘PhotoGEA’ version ‘1.4.0’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [4s/6s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘PhotoGEA’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [26s/30s] OK
- checking Rd files ... [2s/4s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [159s/200s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
confidence_intervals_c3_aci 9.735 0.011 12.320
fit_c3_variable_j 7.911 0.028 10.258
fit_c3_aci 7.719 0.031 11.707
confidence_intervals_c4_aci 7.500 0.008 8.292
initial_guess_c3_variable_j 6.350 0.032 7.599
fit_c4_aci 6.203 0.012 7.856
plot_c3_aci_fit 5.080 0.000 6.305
calculate_c3_limitations_warren 5.056 0.004 5.661
calculate_c3_limitations_grassi 5.037 0.008 6.063
calculate_jmax 5.008 0.008 6.877
plot_c4_aci_fit 4.906 0.008 6.159
initial_guess_c4_aci 4.491 0.008 5.903
initial_guess_c3_aci 4.379 0.012 5.242
fit_c4_aci_hyperbola 4.140 0.004 5.574
process_tdl_cycle_erml 4.124 0.007 5.138
plot_c4_aci_hyperbola_fit 3.785 0.004 5.265
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [208s/281s] OK
Running ‘testthat.R’ [207s/280s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [2s/2s] OK
- checking PDF version of manual ... [22s/30s] OK
- checking HTML version of manual ... [25s/35s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK