* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘Phase12Compare’ ...
** this is package ‘Phase12Compare’ version ‘1.5’
** package ‘Phase12Compare’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (7)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6pMwMJ/R.INSTALL94c55280571d8/Phase12Compare/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c SPSOCODE.cpp -o SPSOCODE.o
SPSOCODE.cpp:676:7: warning: unused variable 'm' [-Wunused-variable]
676 | int m=0;
| ^
SPSOCODE.cpp:1080:10: warning: unused variable 'p' [-Wunused-variable]
1080 | double p=0;
| ^
SPSOCODE.cpp:1081:10: warning: unused variable 'pu' [-Wunused-variable]
1081 | double pu=0;
| ^~
SPSOCODE.cpp:1082:10: warning: unused variable 'pl' [-Wunused-variable]
1082 | double pl=0;
| ^~
SPSOCODE.cpp:1083:10: warning: unused variable 'tol' [-Wunused-variable]
1083 | double tol=.005;
| ^~~
SPSOCODE.cpp:1109:7: warning: unused variable 'Count' [-Wunused-variable]
1109 | int Count=0;
| ^~~~~
SPSOCODE.cpp:1119:7: warning: unused variable 'nREP' [-Wunused-variable]
1119 | int nREP=0;
| ^~~~
SPSOCODE.cpp:1162:10: warning: unused variable 'min1' [-Wunused-variable]
1162 | double min1=0;
| ^~~~
SPSOCODE.cpp:1990:7: warning: unused variable 'Count' [-Wunused-variable]
1990 | int Count=0;
| ^~~~~
SPSOCODE.cpp:2000:7: warning: unused variable 'nREP' [-Wunused-variable]
2000 | int nREP=0;
| ^~~~
SPSOCODE.cpp:2043:10: warning: unused variable 'min1' [-Wunused-variable]
2043 | double min1=0;
| ^~~~
SPSOCODE.cpp:2821:10: warning: unused variable 'phivar' [-Wunused-variable]
2821 | double phivar=Hypervars[2]; //Variance parameter for frailty correlations
| ^~~~~~
SPSOCODE.cpp:2822:10: warning: variable 'phi' set but not used [-Wunused-but-set-variable]
2822 | double phi=0;
| ^
SPSOCODE.cpp:2893:10: warning: unused variable 'epprop' [-Wunused-variable]
2893 | double epprop = 0; //proposal values for epsilon
| ^~~~~~
SPSOCODE.cpp:2942:10: warning: unused variable 'epEC' [-Wunused-variable]
2942 | double epEC = 1;
| ^~~~
SPSOCODE.cpp:2943:10: warning: unused variable 'epTC' [-Wunused-variable]
2943 | double epTC = 1;
| ^~~~
SPSOCODE.cpp:2982:10: warning: unused variable 'holdmin' [-Wunused-variable]
2982 | double holdmin=1;
| ^~~~~~~
SPSOCODE.cpp:3744:7: warning: unused variable 'Stopped' [-Wunused-variable]
3744 | int Stopped=0;
| ^~~~~~~
SPSOCODE.cpp:3791:7: warning: unused variable 'Count' [-Wunused-variable]
3791 | int Count=0;
| ^~~~~
SPSOCODE.cpp:3801:7: warning: unused variable 'nREP' [-Wunused-variable]
3801 | int nREP=0;
| ^~~~
SPSOCODE.cpp:3824:7: warning: unused variable 'm' [-Wunused-variable]
3824 | int m=0;
| ^
SPSOCODE.cpp:3841:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable]
3841 | int STOPPED=0;
| ^
SPSOCODE.cpp:3842:7: warning: unused variable 'i' [-Wunused-variable]
3842 | int i=0;
| ^
SPSOCODE.cpp:3844:10: warning: unused variable 'min1' [-Wunused-variable]
3844 | double min1=0;
| ^~~~
SPSOCODE.cpp:3848:7: warning: unused variable 'nRep' [-Wunused-variable]
3848 | int nRep=0;
| ^~~~
SPSOCODE.cpp:4222:7: warning: unused variable 'Stopped' [-Wunused-variable]
4222 | int Stopped=0;
| ^~~~~~~
SPSOCODE.cpp:4240:10: warning: unused variable 'p' [-Wunused-variable]
4240 | double p=0;
| ^
SPSOCODE.cpp:4241:10: warning: unused variable 'pu' [-Wunused-variable]
4241 | double pu=0;
| ^~
SPSOCODE.cpp:4242:10: warning: unused variable 'pl' [-Wunused-variable]
4242 | double pl=0;
| ^~
SPSOCODE.cpp:4243:10: warning: unused variable 'tol' [-Wunused-variable]
4243 | double tol=.005;
| ^~~
SPSOCODE.cpp:4258:7: warning: unused variable 'Count' [-Wunused-variable]
4258 | int Count=0;
| ^~~~~
SPSOCODE.cpp:4268:7: warning: unused variable 'nREP' [-Wunused-variable]
4268 | int nREP=0;
| ^~~~
SPSOCODE.cpp:4294:7: warning: unused variable 'm' [-Wunused-variable]
4294 | int m=0;
| ^
SPSOCODE.cpp:4311:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable]
4311 | int STOPPED=0;
| ^
SPSOCODE.cpp:4312:7: warning: unused variable 'i' [-Wunused-variable]
4312 | int i=0;
| ^
SPSOCODE.cpp:4314:10: warning: unused variable 'min1' [-Wunused-variable]
4314 | double min1=0;
| ^~~~
SPSOCODE.cpp:4318:7: warning: unused variable 'nRep' [-Wunused-variable]
4318 | int nRep=0;
| ^~~~
37 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o Phase12Compare.so RcppExports.o SPSOCODE.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6pMwMJ/R.INSTALL94c55280571d8/Phase12Compare/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6pMwMJ/R.INSTALL94c55280571d8/Phase12Compare/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6pMwMJ/R.INSTALL94c55280571d8/Phase12Compare/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-Phase12Compare/00new/Phase12Compare/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Phase12Compare)