* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘PKPDsim’ ...
** package ‘PKPDsim’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.7 (1)’
make[1]: Entering directory '/tmp/RtmpJAysfg/R.INSTALL2858d97dcda4c0/PKPDsim/src'
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c RcppExports.cpp -o RcppExports.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_1cmt_iv_bolus.cpp -o pk_1cmt_iv_bolus.o
pk_1cmt_iv_bolus.cpp:20:30: warning: unused variable 'it' [-Wunused-variable]
   20 |   std::vector<int>::iterator it;
      |                              ^~
1 warning generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_1cmt_iv_bolus_covariates.cpp -o pk_1cmt_iv_bolus_covariates.o
pk_1cmt_iv_bolus_covariates.cpp:8:10: warning: unused variable 'CLi' [-Wunused-variable]
    8 |   double CLi, Vi, tmp;
      |          ^~~
pk_1cmt_iv_bolus_covariates.cpp:8:15: warning: unused variable 'Vi' [-Wunused-variable]
    8 |   double CLi, Vi, tmp;
      |               ^~
pk_1cmt_iv_bolus_covariates.cpp:8:19: warning: unused variable 'tmp' [-Wunused-variable]
    8 |   double CLi, Vi, tmp;
      |                   ^~~
pk_1cmt_iv_bolus_covariates.cpp:12:10: warning: unused variable 'CL' [-Wunused-variable]
   12 |   double CL = parameters["CL"];
      |          ^~
pk_1cmt_iv_bolus_covariates.cpp:13:10: warning: unused variable 'V' [-Wunused-variable]
   13 |   double V  = parameters["V"];
      |          ^
pk_1cmt_iv_bolus_covariates.cpp:23:30: warning: unused variable 'it' [-Wunused-variable]
   23 |   std::vector<int>::iterator it;
      |                              ^~
6 warnings generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_1cmt_iv_infusion.cpp -o pk_1cmt_iv_infusion.o
pk_1cmt_iv_infusion.cpp:20:30: warning: unused variable 'it' [-Wunused-variable]
   20 |   std::vector<int>::iterator it;
      |                              ^~
1 warning generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_1cmt_oral.cpp -o pk_1cmt_oral.o
pk_1cmt_oral.cpp:25:30: warning: unused variable 'it' [-Wunused-variable]
   25 |   std::vector<int>::iterator it;
      |                              ^~
1 warning generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_2cmt_iv_bolus.cpp -o pk_2cmt_iv_bolus.o
pk_2cmt_iv_bolus.cpp:24:30: warning: unused variable 'it' [-Wunused-variable]
   24 |   std::vector<int>::iterator it;
      |                              ^~
1 warning generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_2cmt_iv_infusion.cpp -o pk_2cmt_iv_infusion.o
pk_2cmt_iv_infusion.cpp:25:30: warning: unused variable 'it' [-Wunused-variable]
   25 |   std::vector<int>::iterator it;
      |                              ^~
1 warning generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_2cmt_oral.cpp -o pk_2cmt_oral.o
pk_2cmt_oral.cpp:8:14: warning: unused variable 'k10' [-Wunused-variable]
    8 |   double ka, k10, k20, k30, k23, k32, E1, E2, E3, lambda1, lambda2, t, A1last, A2last, A3last, A2term1, A2term2, A3term1, A3term2;
      |              ^~~
pk_2cmt_oral.cpp:8:39: warning: unused variable 'E1' [-Wunused-variable]
    8 |   double ka, k10, k20, k30, k23, k32, E1, E2, E3, lambda1, lambda2, t, A1last, A2last, A3last, A2term1, A2term2, A3term1, A3term2;
      |                                       ^~
pk_2cmt_oral.cpp:29:30: warning: unused variable 'it' [-Wunused-variable]
   29 |   std::vector<int>::iterator it;
      |                              ^~
3 warnings generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_3cmt_iv_bolus.cpp -o pk_3cmt_iv_bolus.o
pk_3cmt_iv_bolus.cpp:30:30: warning: unused variable 'it' [-Wunused-variable]
   30 |   std::vector<int>::iterator it;
      |                              ^~
1 warning generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_3cmt_iv_infusion.cpp -o pk_3cmt_iv_infusion.o
pk_3cmt_iv_infusion.cpp:31:30: warning: unused variable 'it' [-Wunused-variable]
   31 |   std::vector<int>::iterator it;
      |                              ^~
1 warning generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c pk_3cmt_oral.cpp -o pk_3cmt_oral.o
pk_3cmt_oral.cpp:8:14: warning: unused variable 'k10' [-Wunused-variable]
    8 |   double ka, k10, k20, k23, k32, k24, k42, k30, k40, E1, E2, E3, E4;
      |              ^~~
pk_3cmt_oral.cpp:8:54: warning: unused variable 'E1' [-Wunused-variable]
    8 |   double ka, k10, k20, k23, k32, k24, k42, k30, k40, E1, E2, E3, E4;
      |                                                      ^~
pk_3cmt_oral.cpp:10:42: warning: unused variable 'A1term1' [-Wunused-variable]
   10 |   double A1last, A2last, A3last, A4last, A1term1, A1term2, A2term1, A2term2, A2term3, A3term1, A3term2, A3term3, A4term1, A4term2, A4term3;
      |                                          ^~~~~~~
pk_3cmt_oral.cpp:10:51: warning: unused variable 'A1term2' [-Wunused-variable]
   10 |   double A1last, A2last, A3last, A4last, A1term1, A1term2, A2term1, A2term2, A2term3, A3term1, A3term2, A3term3, A4term1, A4term2, A4term3;
      |                                                   ^~~~~~~
pk_3cmt_oral.cpp:35:30: warning: unused variable 'it' [-Wunused-variable]
   35 |   std::vector<int>::iterator it;
      |                              ^~
5 warnings generated.
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o PKPDsim.so RcppExports.o pk_1cmt_iv_bolus.o pk_1cmt_iv_bolus_covariates.o pk_1cmt_iv_infusion.o pk_1cmt_oral.o pk_2cmt_iv_bolus.o pk_2cmt_iv_infusion.o pk_2cmt_oral.o pk_3cmt_iv_bolus.o pk_3cmt_iv_infusion.o pk_3cmt_oral.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpJAysfg/R.INSTALL2858d97dcda4c0/PKPDsim/src'
make[1]: Entering directory '/tmp/RtmpJAysfg/R.INSTALL2858d97dcda4c0/PKPDsim/src'
make[1]: Leaving directory '/tmp/RtmpJAysfg/R.INSTALL2858d97dcda4c0/PKPDsim/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-PKPDsim/00new/PKPDsim/libs
** R
** data
*** moving datasets to lazyload DB
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘PKPDsim’ as ‘PKPDsim_1.3.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (PKPDsim)