• using R Under development (unstable) (2023-09-26 r85226)
• using platform: x86_64-pc-linux-gnu
• R was compiled by
      Debian clang version 16.0.6 (15)
      GNU Fortran (Debian 13.2.0-4) 13.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘NHMSAR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘NHMSAR’ version ‘1.19’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘NHMSAR’ can be installed ... OK
  See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [40s/45s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... NOTE
  Invalid package aliases in Rd file 'NH-MSAR-package.Rd':
    ‘NH-MSAR-package’
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... NOTE
  Argument items with no description in Rd object 'ENu_graph':
    ‘N.s.data’
  Argument items with no description in Rd object 'Estep.MSAR.VM':
    ‘verbose’
  Auto-generated content requiring editing in Rd object 'NH-MSAR-package':
    \details: ‘...the package, including the most important ~~ ~~ functions ~~’
  Argument items with no description in Rd object 'init.theta.MSAR (NH-MSAR)':
    ‘\dots’
  Argument items with no description in Rd object 'init.theta.MSAR.VM':
    ‘\dots’
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [28s/30s] OK
  Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
  valid_all.MSAR 4.555 0.032 5.027
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [3s/6s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs