• using R Under development (unstable) (2026-09-25 r90590)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 23.1.2 (1)     Debian flang version 23.1.2 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-09-28 17:59:50 UTC
• checking for file ‘MiscMetabar/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘MiscMetabar’ version ‘0.16.8’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [4s/6s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘MiscMetabar’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [9s/12s] OK
• checking whether the package can be loaded with stated dependencies ... [8s/11s] OK
• checking whether the package can be unloaded cleanly ... [8s/11s] OK
• checking whether the namespace can be loaded with stated dependencies ... [9s/12s] OK
• checking whether the namespace can be unloaded cleanly ... [9s/12s] OK
• checking loading without being on the library search path ... [9s/13s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE Base package in Suggests/Enhances imported in NAMESPACE:   ‘grDevices’
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [72s/92s] OK
• checking Rd files ... [2s/3s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... INFO Exported functions without usage information:   adonis_phyloseq biplot_physeq clean_physeq ggVenn_phyloseq   hill_phyloseq hill_tuckey_phyloseq lulu_phyloseq otu_circle   plot_deseq2_phyloseq plot_edgeR_phyloseq read_phyloseq   sankey_phyloseq summary_plot_phyloseq venn_phyloseq write_phyloseq
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [9s/11s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [137s/176s] OK Examples with CPU (user + system) or elapsed time > 5s                           user system elapsed sankey_pq 10.963 0.115 13.110 filter_trim 8.808 0.336 12.006 hill_bar_pq 7.827 0.059 10.012 venn_pq 6.579 0.335 8.466 biplot_pq 5.833 0.096 8.271 plot_complexity_pq 5.528 0.024 7.240 subset_taxa_tax_control 5.272 0.051 6.339 umap_pq 4.550 0.018 5.427 hill_tuckey_pq 4.102 0.026 5.576 SRS_curve_pq 3.879 0.112 5.254 hill_pq 3.869 0.049 5.247 ggscatt_pq 3.429 0.114 5.257
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [313s/207s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [312s/206s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [15s/21s] OK
• checking PDF version of manual ... [15s/20s] OK
• checking HTML version of manual ... [10s/14s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE