• using R Under development (unstable) (2025-09-14 r88831)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b2)     Debian flang-new version 19.1.7 (3+b2)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘MiMIR/DESCRIPTION’ ... OK
• this is package ‘MiMIR’ version ‘1.5’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘MiMIR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [5s/6s] OK
• checking whether the package can be loaded with stated dependencies ... [5s/6s] OK
• checking whether the package can be unloaded cleanly ... [5s/6s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/7s] OK
• checking whether the namespace can be unloaded cleanly ... [5s/9s] OK
• checking loading without being on the library search path ... [5s/7s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s/42s] OK
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• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [8s/12s] ERROR Running examples in ‘MiMIR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: MetaboWAS > ### Title: MetaboWAS > ### Aliases: MetaboWAS > > ### ** Examples > > require(MiMIR) > require(plotly) Loading required package: plotly Loading required package: ggplot2 Attaching package: ‘plotly’ The following object is masked from ‘package:ggplot2’:     last_plot The following object is masked from ‘package:stats’:     filter The following object is masked from ‘package:graphics’:     layout > require(ggplot2) > > #' #load the dataset > metabolic_measures <- synthetic_metabolic_dataset > phenotypes <- synthetic_phenotypic_dataset > > #Computing a MetaboWAS for age corrected by sex > MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex") Error in `ggplot2::scale_y_continuous()`: ! `limits` must be a vector of length 2, not length 7. Backtrace:     ▆  1. └─MiMIR::MetaboWAS(...)  2. └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))  3. └─ggplot2::continuous_scale(...)  4. └─ggplot2:::check_continuous_limits(limits, call = call)  5. └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)  6. └─cli::cli_abort(msg, call = call, arg = arg)  7. └─rlang::abort(...) Execution halted
• checking PDF version of manual ... [8s/12s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR