* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘MetaSKAT’ ...
** this is package ‘MetaSKAT’ version ‘0.90’
** package ‘MetaSKAT’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (10)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLwzplf/R.INSTALL2e485f73e16e38/MetaSKAT/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Interface_Meta.cpp -o Interface_Meta.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c MatFile.cpp -o MatFile.o
In file included from MatFile.cpp:6:
./MatFile.h:52:7: warning: private field 'm_decode_out' is not used [-Wunused-private-field]
   52 |         char    m_decode_out[4];
      |                 ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Meta.cpp -o Meta.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Permutation.cpp -o Permutation.o
In file included from Permutation.cpp:2:
./Permutation.h:37:14: warning: private field 'm_nPop' is not used [-Wunused-private-field]
   37 |     int      m_nPop;
      |              ^
./Permutation.h:44:13: warning: private field 'm_pScoreOrg' is not used [-Wunused-private-field]
   44 |     float * m_pScoreOrg;
      |             ^
./Permutation.h:46:20: warning: private field 'm_pbuffer' is not used [-Wunused-private-field]
   46 |     unsigned char       *m_pbuffer;     
      |                          ^
3 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RFunc.cpp -o RFunc.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Read_BED.cpp -o Read_BED.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Read_Dosage.cpp -o Read_Dosage.o
In file included from Read_Dosage.cpp:5:
./Read_Dosage.h:55:7: warning: private field 'm_FileSize' is not used [-Wunused-private-field]
   55 |         int             m_FileSize;
      |                         ^
./Read_Dosage.h:60:6: warning: private field 'm_debugPos' is not used [-Wunused-private-field]
   60 |         int m_debugPos ;
      |             ^
./Read_Dosage.h:61:6: warning: private field 'm_debuglength' is not used [-Wunused-private-field]
   61 |         int m_debuglength ;
      |             ^
3 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c crc32.cpp -o crc32.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o MetaSKAT.so Interface_Meta.o MatFile.o Meta.o Permutation.o RFunc.o Read_BED.o Read_Dosage.o crc32.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLwzplf/R.INSTALL2e485f73e16e38/MetaSKAT/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLwzplf/R.INSTALL2e485f73e16e38/MetaSKAT/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLwzplf/R.INSTALL2e485f73e16e38/MetaSKAT/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-MetaSKAT/00new/MetaSKAT/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MetaSKAT)