- using R Under development (unstable) (2023-11-26 r85638)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 17.0.5 (1)
Debian flang-new version 17.0.5 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘Mercator/DESCRIPTION’ ... OK
- this is package ‘Mercator’ version ‘1.1.2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘Mercator’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [6s/8s] OK
- checking whether the package can be loaded with stated dependencies ... [6s/7s] OK
- checking whether the package can be unloaded cleanly ... [6s/7s] OK
- checking whether the namespace can be loaded with stated dependencies ... [6s/7s] OK
- checking whether the namespace can be unloaded cleanly ... [7s/8s] OK
- checking loading without being on the library search path ... [6s/8s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [30s/36s] OK
- checking Rd files ... [1s/1s] NOTE
checkRd: (-1) Mercator-class.Rd:91-92: Lost braces
91 | \item{barplot{height, main = '', sub = NULL, border = NA, space =
| ^
checkRd: (-1) Mercator-class.Rd:109-112: Lost braces
109 | \item{hist:}{\code{signature(object = "Mercator")}}{
| ^
checkRd: (-1) Mercator-class.Rd:113-116: Lost braces
113 | \item{summary:}{\code{signature(object = "Mercator")}}{
| ^
checkRd: (-1) Mercator-class.Rd:117-119: Lost braces
117 | \item{dim:}{\code{signature(object = "Mercator")}}{
| ^
checkRd: (-1) Mercator-class.Rd:120-122: Lost braces
120 | \item{[:}{\code{signature(object = "Mercator")}}{
| ^
checkRd: (-1) threshLGF.Rd:21: Lost braces; missing escapes or markup?
21 | \item{object}{An object of class {BinaryMatrix}
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [7s/9s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [10s/14s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [122s/160s] OK
Running ‘test-01Metrics.R’ [16s/23s]
Comparing ‘test-01Metrics.Rout’ to ‘test-01Metrics.Rout.save’ ... OK
Running ‘test-02binmat.R’ [7s/11s]
Comparing ‘test-02binmat.Rout’ to ‘test-02binmat.Rout.save’ ... OK
Running ‘test-03thresh.R’ [34s/42s]
Comparing ‘test-03thresh.Rout’ to ‘test-03thresh.Rout.save’ ... OK
Running ‘test-04vis.R’ [49s/62s]
Comparing ‘test-04vis.Rout’ to ‘test-04vis.Rout.save’ ... OK
Running ‘test-05recolor.R’ [9s/11s]
Comparing ‘test-05recolor.Rout’ to ‘test-05recolor.Rout.save’ ... OK
Running ‘test-06names.R’ [7s/10s]
Comparing ‘test-06names.Rout’ to ‘test-06names.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [46s/60s] OK
- checking PDF version of manual ... [6s/9s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE