Install log for 'LocalCop'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘LocalCop’ ...
** this is package ‘LocalCop’ version ‘0.0.2’
** package ‘LocalCop’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 23.1.0 (2)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQDdesV/R.INSTALL24164436f732d1/LocalCop/src'
clang++-23 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c init_dummy_file.cpp -o init_dummy_file.o
(cd TMB; /home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/Rscript \
--no-save --no-restore compile.R '-I"../../inst/include"')
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 23.1.0 (2)’
make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpQDdesV/R.INSTALL24164436f732d1/LocalCop/src/TMB'
clang++-23 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_LocalCop_TMBExports  -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I"../../inst/include" -fpic  -g -O3 -Wall -pedantic   -c LocalCop_TMBExports.cpp -o LocalCop_TMBExports.o
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:92:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Cholesky:32:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
  240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
      |              ^~~~~~~~~~~~~~~~~~~~~
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:55:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template]
   18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template]
  270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:56:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template]
   20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/OrderingMethods:66:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template]
   35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n)
      |                     ^~~~~~~~~
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/OrderingMethods:67:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template]
  501 | static IndexType init_rows_cols  /* returns true if OK, or false otherwise */
      |                  ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template]
  717 | static void init_scoring
      |             ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template]
  954 | static IndexType find_ordering /* return the number of garbage collections */
      |                  ^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template]
 1566 | static void detect_super_cols
      |             ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template]
 1717 | static IndexType garbage_collection  /* returns the new value of pfree */
      |                  ^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template]
  342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats])
      |             ^~~~~~~~~~~~~~~~
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:226:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/atomic.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/bessel/bessel.hpp:64:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/bessel/bessel_k.cpp:122:13: warning: unused function template 'K_bessel' [-Wunused-template]
  122 | static void K_bessel(Float *x, Float *alpha, int *nb,
      |             ^~~~~~~~
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:226:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/atomic.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/bessel/bessel.hpp:73:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/bessel/bessel_j.cpp:141:13: warning: unused function template 'J_bessel' [-Wunused-template]
  141 | static void J_bessel(Float *x, Float *alpha, int *nb,
      |             ^~~~~~~~
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:226:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/atomic.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/bessel/bessel.hpp:74:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/bessel/bessel_y.cpp:150:13: warning: unused function template 'Y_bessel' [-Wunused-template]
  150 | static void Y_bessel(Float *x, Float *alpha, int *nb,
      |             ^~~~~~~~
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:226:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/atomic.hpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/bessel/bessel.hpp:100:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/bessel/bessel_i.cpp:136:13: warning: unused function template 'I_bessel' [-Wunused-template]
  136 | static void I_bessel(Float *x, Float *alpha, int *nb,
      |             ^~~~~~~~
In file included from LocalCop_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:227:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/integrate/integrate.hpp:40:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/integrate/integrate.cpp:248:6: warning: unused function template 'rdqagie' [-Wunused-template]
  248 | void rdqagie(integr_fn f, void *ex, Float *bound, int *inf, Float *
      |      ^~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/integrate/integrate.cpp:1482:52: warning: unused function template 'rdqk15i' [-Wunused-template]
 1482 | template<class Float, class integr_fn> static void rdqk15i(integr_fn f, void *ex,
      |                                                    ^~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/integrate/integrate.cpp:976:6: warning: unused function template 'rdqagse' [-Wunused-template]
  976 | void rdqagse(integr_fn f, void *ex, Float *a, Float *b, Float *
      |      ^~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/integrate/integrate.cpp:1913:53: warning: unused function template 'rdqk21' [-Wunused-template]
 1913 | template<class Float, class integr_fn> static void  rdqk21(integr_fn f, void *ex, Float *a, Float *b, Float *result,
      |                                                     ^~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/integrate/integrate.cpp:2122:35: warning: unused function template 'rdqpsrt' [-Wunused-template]
 2122 | template<class Float> static void rdqpsrt(int *limit, int *last, int *maxerr,
      |                                   ^~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tiny_ad/integrate/integrate.cpp:1712:35: warning: unused function template 'rdqelg' [-Wunused-template]
 1712 | template<class Float> static void rdqelg(int *n, Float *epstab, Float *
      |                                   ^~~~~~
24 warnings generated.
clang++-23 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o LocalCop_TMBExports.so LocalCop_TMBExports.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpQDdesV/R.INSTALL24164436f732d1/LocalCop/src/TMB'
make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpQDdesV/R.INSTALL24164436f732d1/LocalCop/src/TMB'
make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpQDdesV/R.INSTALL24164436f732d1/LocalCop/src/TMB'
[1] TRUE
clang++-23 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o LocalCop.so init_dummy_file.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQDdesV/R.INSTALL24164436f732d1/LocalCop/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQDdesV/R.INSTALL24164436f732d1/LocalCop/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQDdesV/R.INSTALL24164436f732d1/LocalCop/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-LocalCop/00new/LocalCop/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LocalCop)