* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘LOMAR’ ...
** this is package ‘LOMAR’ version ‘0.5.2’
** package ‘LOMAR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 21.1.8 (3)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKoLdxh/R.INSTALLe1c111ea4d154/LOMAR/src'
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DBOOST_DISABLE_THREADS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DBOOST_DISABLE_THREADS -fpic -g -O3 -Wall -pedantic -c diag.cpp -o diag.o
In file included from diag.cpp:5:
In file included from ./tdautils/ripsL2.h:9:
In file included from ./topology/persistence-diagram.h:176:
In file included from ./topology/persistence-diagram.hpp:143:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr<boost::no_property>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
63 | explicit scoped_ptr( std::auto_ptr<T> p ) noexcept : px( p.release() )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr<boost::no_property>' requested here
411 | property_ptr m_property;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/graph_traits.hpp:62:22: note: in instantiation of template class 'boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS>' requested here
62 | typedef typename G::vertex_descriptor vertex_descriptor;
| ^
./topology/persistence-diagram.hpp:163:40: note: in instantiation of template class 'boost::graph_traits<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS>>' requested here
163 | typedef std::vector<boost::graph_traits<Graph>::vertex_descriptor> MatchingVector;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::no_property>' has been explicitly marked deprecated here
291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from diag.cpp:5:
In file included from ./tdautils/ripsL2.h:9:
In file included from ./topology/persistence-diagram.h:176:
In file included from ./topology/persistence-diagram.hpp:143:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr<boost::archive::detail::basic_oarchive_impl>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
63 | explicit scoped_ptr( std::auto_ptr<T> p ) noexcept : px( p.release() )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/archive/detail/basic_oarchive.hpp:49:44: note: in instantiation of template class 'boost::scoped_ptr<boost::archive::detail::basic_oarchive_impl>' requested here
49 | boost::scoped_ptr<basic_oarchive_impl> pimpl;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::archive::detail::basic_oarchive_impl>' has been explicitly marked deprecated here
291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from diag.cpp:5:
In file included from ./tdautils/ripsL2.h:9:
In file included from ./topology/persistence-diagram.h:176:
In file included from ./topology/persistence-diagram.hpp:143:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr<boost::archive::detail::basic_iarchive_impl>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
63 | explicit scoped_ptr( std::auto_ptr<T> p ) noexcept : px( p.release() )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/archive/detail/basic_iarchive.hpp:51:44: note: in instantiation of template class 'boost::scoped_ptr<boost::archive::detail::basic_iarchive_impl>' requested here
51 | boost::scoped_ptr<basic_iarchive_impl> pimpl;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::archive::detail::basic_iarchive_impl>' has been explicitly marked deprecated here
291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
3 warnings generated.
clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o LOMAR.so RcppExports.o diag.o -lgmp -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKoLdxh/R.INSTALLe1c111ea4d154/LOMAR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKoLdxh/R.INSTALLe1c111ea4d154/LOMAR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKoLdxh/R.INSTALLe1c111ea4d154/LOMAR/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-LOMAR/00new/LOMAR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LOMAR)