• using R Under development (unstable) (2024-10-01 r87205)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.0 (4)     Debian flang-new version 19.1.0 (4)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘KinMixLite/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘KinMixLite’ version ‘2.1.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘KinMixLite’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/5s] OK
• checking whether the package can be unloaded cleanly ... [3s/5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [25s/30s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   convertIBD.Rd: pedtools   logL.UKX.Rd: logL.UK   logLX.Rd: logL   mixMLX.Rd: mixML   pedigreeIBD.Rd: pedtools   wlr.Rd: map.genotypes Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [30m/37m] ERROR Running examples in ‘KinMixLite-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: wlr > ### Title: Computes paternity LR using WLR method > ### Aliases: wlr > > ### ** Examples > > data(test2data) > data(NGMDyes) > > # set threshold C > C<-0.001 > > pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1))) > > mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes)) > setPeakInfo(mixWLR,pars) > sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1) Killed Examples with CPU (user + system) or elapsed time > 5s                     user system elapsed loop.rpt.IBD 6.783 0.180 9.118 mixMLX 6.647 0.067 7.455 KinMixLite-package 4.353 0.419 7.225
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE