* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘GreedyEPL’ ...
** this is package ‘GreedyEPL’ version ‘1.2’
** package ‘GreedyEPL’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 19.1.7 (3+b2)’
using C++ compiler: ‘Debian clang version 19.1.7 (3+b2)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiO0BRM/R.INSTALL16fb5865e36b8c/GreedyEPL/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c core_binder.cpp -o core_binder.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c core_minimise_epl.cpp -o core_minimise_epl.o
core_minimise_epl.cpp:25:10: warning: variable 'tempo' set but not used [-Wunused-but-set-variable]
25 | double tempo;
| ^
core_minimise_epl.cpp:45:33: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
45 | delta_best = data->deltas.min(h_best_uword);
| ^
core_minimise_epl.cpp:67:15: note: in instantiation of function template specialization 'MinimiseEpl<variation_of_information>' requested here
67 | epl_store = MinimiseEpl(&data, 100);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^
core_minimise_epl.cpp:45:33: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
45 | delta_best = data->deltas.min(h_best_uword);
| ^
core_minimise_epl.cpp:77:15: note: in instantiation of function template specialization 'MinimiseEpl<binder>' requested here
77 | epl_store = MinimiseEpl(&data, 100);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^
core_minimise_epl.cpp:45:33: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
45 | delta_best = data->deltas.min(h_best_uword);
| ^
core_minimise_epl.cpp:87:15: note: in instantiation of function template specialization 'MinimiseEpl<normalised_variation_of_information>' requested here
87 | epl_store = MinimiseEpl(&data, 100);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^
core_minimise_epl.cpp:45:33: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
45 | delta_best = data->deltas.min(h_best_uword);
| ^
core_minimise_epl.cpp:97:15: note: in instantiation of function template specialization 'MinimiseEpl<normalised_information_distance>' requested here
97 | epl_store = MinimiseEpl(&data, 100);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^
5 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c core_normalised_information_distance.cpp -o core_normalised_information_distance.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c core_normalised_variation_of_information.cpp -o core_normalised_variation_of_information.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c core_sample_of_partitions.cpp -o core_sample_of_partitions.o
core_sample_of_partitions.cpp:111:23: warning: unused variable 'g' [-Wunused-variable]
111 | arma::vec::iterator g, h;
| ^
core_sample_of_partitions.cpp:111:26: warning: unused variable 'h' [-Wunused-variable]
111 | arma::vec::iterator g, h;
| ^
2 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c core_variation_of_information.cpp -o core_variation_of_information.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c utils_collapse_labels.cpp -o utils_collapse_labels.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c utils_entropy.cpp -o utils_entropy.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o GreedyEPL.so RcppExports.o core_binder.o core_minimise_epl.o core_normalised_information_distance.o core_normalised_variation_of_information.o core_sample_of_partitions.o core_variation_of_information.o init.o utils_collapse_labels.o utils_entropy.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiO0BRM/R.INSTALL16fb5865e36b8c/GreedyEPL/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiO0BRM/R.INSTALL16fb5865e36b8c/GreedyEPL/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiO0BRM/R.INSTALL16fb5865e36b8c/GreedyEPL/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-GreedyEPL/00new/GreedyEPL/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GreedyEPL)