- using R Under development (unstable) (2025-12-18 r89199)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 21.1.7 (1)
Debian flang version 21.1.7 (1)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘FIESTA/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘FIESTA’ version ‘3.7.1’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [2s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘FIESTA’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s/6s] OK
- checking whether the package can be loaded with stated dependencies ... [4s/6s] OK
- checking whether the package can be unloaded cleanly ... [4s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s/5s] OK
- checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
- checking loading without being on the library search path ... [4s/5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [129s/163s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [12s/13s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [6s/8s] OK
Running ‘testthat.R’ [6s/7s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [96s/116s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘FIESTA_tutorial_GB.Rmd’ using rmarkdown
Quitting from FIESTA_tutorial_GB.Rmd:247-261 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
▆
1. └─FIESTA::modGBpop(...)
2. └─FIESTA:::check.auxiliary(...)
3. ├─base::suppressWarnings(...)
4. │ └─base::withCallingHandlers(...)
5. ├─auxlut[, `:=`(strwt, prop.table(get(getwtvar))), by = unitvar]
6. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'FIESTA_tutorial_GB.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘FIESTA_tutorial_GB.Rmd’
--- re-building ‘FIESTA_tutorial_MA.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘FIESTA_tutorial_MA.Rmd’
--- re-building ‘FIESTA_tutorial_PB.Rmd’ using rmarkdown
Quitting from FIESTA_tutorial_PB.Rmd:538-549 [unnamed-chunk-31]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
▆
1. └─FIESTA::modPBpop(...)
2. └─FIESTA:::check.auxiliary(...)
3. ├─base::suppressWarnings(...)
4. │ └─base::withCallingHandlers(...)
5. ├─auxlut[, `:=`(strwt, prop.table(get(getwtvar))), by = unitvar]
6. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'FIESTA_tutorial_PB.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘FIESTA_tutorial_PB.Rmd’
--- re-building ‘FIESTA_tutorial_SA.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘FIESTA_tutorial_SA.Rmd’
SUMMARY: processing the following files failed:
‘FIESTA_tutorial_GB.Rmd’ ‘FIESTA_tutorial_PB.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [15s/19s] OK
- checking HTML version of manual ... [15s/20s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR