* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘FBFsearch’ ...
** this is package ‘FBFsearch’ version ‘1.2’
** package ‘FBFsearch’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 19.1.7 (7)’
using C++ compiler: ‘Debian clang version 19.1.7 (7)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9aR6CY/R.INSTALL3fd4221c45c99/FBFsearch/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c FBFsearch.cpp -o FBFsearch.o
FBFsearch.cpp:164:8: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
164 | if(!is_finite(tree(z,iM)) && (j<=lM) ){ //if2
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
FBFsearch.cpp:229:8: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
229 | if(!is_finite(tree(z,iM2))){mov(q)=k; q=q+1; break;} else{z=tree(z,iM2);}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
FBFsearch.cpp:318:23: warning: 'from<double, arma::eGlue<arma::Mat<double>, arma::Glue<arma::Op<arma::Mat<double>, arma::op_htrans>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
318 | S2=conv_to<double>::from(yty-(trans(Xty)*betah));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::eGlue<arma::Mat<double>, arma::Glue<arma::Op<arma::Mat<double>, arma::op_htrans>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>>' has been explicitly marked deprecated here
33 | [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
| ^
FBFsearch.cpp:320:41: warning: 'from<double, arma::subview_elem1<double, arma::Mat<unsigned int>>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
320 | iw=find(pa1==e1); mu=conv_to<double>::from(betah.elem(iw));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::subview_elem1<double, arma::Mat<unsigned int>>>' has been explicitly marked deprecated here
33 | [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
| ^
FBFsearch.cpp:321:21: warning: 'from<unsigned int, arma::Mat<unsigned int>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
321 | iwi=conv_to<uli>::from(iw);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<unsigned int, arma::Mat<unsigned int>>' has been explicitly marked deprecated here
33 | [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
| ^
FBFsearch.cpp:326:26: warning: 'from<double, arma::subview_elem1<double, arma::Mat<unsigned int>>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
326 | sigma=conv_to<double>::from(z1.elem(iw));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::subview_elem1<double, arma::Mat<unsigned int>>>' has been explicitly marked deprecated here
33 | [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
| ^
FBFsearch.cpp:340:14: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
340 | log_num1=log_add(log_num1, (ilog4+logHhi+lgamma((n-p-2*i)/2)+ilogS2));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
FBFsearch.cpp:341:14: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
341 | log_den1=log_add(log_den1, (ilog4+logHhi+lgamma((n*b-p-2*i)/2)+ilogS2));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
FBFsearch.cpp:357:32: warning: 'from<double, arma::Mat<double>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
357 | if(p==0){S2=conv_to<double>::from(yty);}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Mat<double>>' has been explicitly marked deprecated here
33 | [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
| ^
FBFsearch.cpp:362:24: warning: 'from<double, arma::eGlue<arma::Mat<double>, arma::Glue<arma::Op<arma::Mat<double>, arma::op_htrans>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
362 | S2=conv_to<double>::from(yty-(trans(Xty)*betah));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::eGlue<arma::Mat<double>, arma::Glue<arma::Op<arma::Mat<double>, arma::op_htrans>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>>' has been explicitly marked deprecated here
33 | [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
| ^
FBFsearch.cpp:376:7: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
376 | if(!is_finite(log_FBF_unpasso)){
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
FBFsearch.cpp:429:28: warning: 'from<double, arma::Mat<double>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
429 | ltree=conv_to<double>::from(treeRes(1,0));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Mat<double>>' has been explicitly marked deprecated here
33 | [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
| ^
FBFsearch.cpp:436:17: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
436 | sum_log_FBF=log_add(sum_log_FBF, log_num_MP_G);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
FBFsearch.cpp:439:34: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
439 | if(G(imq)==1){log_sume(imq)=log_add(log_sume(imq), log_num_MP_G);}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
FBFsearch.cpp:445:18: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
445 | sum_log_RSMP=log_add(sum_log_RSMP, log_num_MP_G);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
FBFsearch.cpp:460:8: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
460 | pRSMP.max(i_n_mod_r);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:5: note: 'max' has been explicitly marked deprecated here
545 | [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
| ^
FBFsearch.cpp:472:9: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
472 | if(!is_finite(mov)){ //if1
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:178:3: note: 'is_finite<arma::Mat<double>>' has been explicitly marked deprecated here
178 | [[deprecated("change arma::is_finite(X) to X.is_finite()")]]
| ^
FBFsearch.cpp:498:15: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
498 | qh.max(imaxe);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:5: note: 'max' has been explicitly marked deprecated here
545 | [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
| ^
FBFsearch.cpp:514:32: warning: 'from<double, arma::Mat<double>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
514 | ltree=conv_to<double>::from(treeRes(1,0));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Mat<double>>' has been explicitly marked deprecated here
33 | [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
| ^
FBFsearch.cpp:521:21: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
521 | sum_log_FBF=log_add(sum_log_FBF, log_num_MP_G);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
FBFsearch.cpp:524:38: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
524 | if(G(imq)==1){log_sume(imq)=log_add(log_sume(imq), log_num_MP_G);}
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
FBFsearch.cpp:637:18: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
637 | Mlogbin_sum=log_add(Mlogbin_sum,lchoose(lcv,rr));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
FBFsearch.cpp:706:15: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
706 | Mlogbin_sum=log_add(Mlogbin_sum,lchoose(lcv,rr));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
FBFsearch.cpp:799:16: warning: 'log_add<double>' is deprecated [-Wdeprecated-declarations]
799 | Mlogbin_sum=log_add(Mlogbin_sum,lchoose(lcv,rr));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:599:3: note: 'log_add<double>' has been explicitly marked deprecated here
599 | [[deprecated]]
| ^
24 warnings generated.
clang-19 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o FBFsearch.so FBFsearch.o init.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9aR6CY/R.INSTALL3fd4221c45c99/FBFsearch/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9aR6CY/R.INSTALL3fd4221c45c99/FBFsearch/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9aR6CY/R.INSTALL3fd4221c45c99/FBFsearch/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-FBFsearch/00new/FBFsearch/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FBFsearch)