• using R Under development (unstable) (2022-05-11 r82344)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: ISO8859-15
• checking for file 'DiPALM/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'DiPALM' version '1.1'
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: 'edgeR'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package 'DiPALM' can be installed ... OK
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [52s/59s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking examples ... [20s/22s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... NOTE
  Found the following problems:
  AdjustPvalue.Rd:19:1: Warning: missing </h2> before <h3>
  AdjustPvalue.Rd:29:1: Warning: discarding unexpected </h2>
  AdjustPvalue.Rd:23:1: Warning: trimming empty <h3>
  BlankPlot.Rd:19:1: Warning: missing </h2> before <h3>
  BlankPlot.Rd:29:1: Warning: discarding unexpected </h2>
  BlankPlot.Rd:23:1: Warning: trimming empty <h3>
  BuildLimmaLM.Rd:19:1: Warning: missing </h2> before <h3>
  BuildLimmaLM.Rd:29:1: Warning: discarding unexpected </h2>
  BuildLimmaLM.Rd:23:1: Warning: trimming empty <h3>
  BuildModMembership.Rd:19:1: Warning: missing </h2> before <h3>
  BuildModMembership.Rd:29:1: Warning: discarding unexpected </h2>
  BuildModMembership.Rd:23:1: Warning: trimming empty <h3>
  DiPALM-package.Rd:19:1: Warning: missing </h2> before <h3>
  DiPALM-package.Rd:29:1: Warning: discarding unexpected </h2>
  DiPALM-package.Rd:23:1: Warning: trimming empty <h3>
  PlotTCs.Rd:19:1: Warning: missing </h2> before <h3>
  PlotTCs.Rd:29:1: Warning: discarding unexpected </h2>
  PlotTCs.Rd:23:1: Warning: trimming empty <h3>
  PlotTCsRibbon.Rd:19:1: Warning: missing </h2> before <h3>
  PlotTCsRibbon.Rd:29:1: Warning: discarding unexpected </h2>
  PlotTCsRibbon.Rd:23:1: Warning: trimming empty <h3>
  exampleData.Rd:19:1: Warning: missing </h2> before <h3>
  exampleData.Rd:29:1: Warning: discarding unexpected </h2>
  exampleData.Rd:23:1: Warning: trimming empty <h3>
  ggPlotMultiDensities.Rd:19:1: Warning: missing </h2> before <h3>
  ggPlotMultiDensities.Rd:29:1: Warning: discarding unexpected </h2>
  ggPlotMultiDensities.Rd:23:1: Warning: trimming empty <h3>
  testData.Rd:19:1: Warning: missing </h2> before <h3>
  testData.Rd:29:1: Warning: discarding unexpected </h2>
  testData.Rd:23:1: Warning: trimming empty <h3>
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs