- using R Under development (unstable) (2022-05-11 r82344)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: ISO8859-15
- checking for file 'DiPALM/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'DiPALM' version '1.1'
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: 'edgeR'
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package 'DiPALM' can be installed ... OK
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [52s/59s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from 'inst/doc' ... OK
- checking examples ... [20s/22s] OK
- checking PDF version of manual ... OK
- checking HTML version of manual ... NOTE
Found the following problems:
AdjustPvalue.Rd:19:1: Warning: missing </h2> before <h3>
AdjustPvalue.Rd:29:1: Warning: discarding unexpected </h2>
AdjustPvalue.Rd:23:1: Warning: trimming empty <h3>
BlankPlot.Rd:19:1: Warning: missing </h2> before <h3>
BlankPlot.Rd:29:1: Warning: discarding unexpected </h2>
BlankPlot.Rd:23:1: Warning: trimming empty <h3>
BuildLimmaLM.Rd:19:1: Warning: missing </h2> before <h3>
BuildLimmaLM.Rd:29:1: Warning: discarding unexpected </h2>
BuildLimmaLM.Rd:23:1: Warning: trimming empty <h3>
BuildModMembership.Rd:19:1: Warning: missing </h2> before <h3>
BuildModMembership.Rd:29:1: Warning: discarding unexpected </h2>
BuildModMembership.Rd:23:1: Warning: trimming empty <h3>
DiPALM-package.Rd:19:1: Warning: missing </h2> before <h3>
DiPALM-package.Rd:29:1: Warning: discarding unexpected </h2>
DiPALM-package.Rd:23:1: Warning: trimming empty <h3>
PlotTCs.Rd:19:1: Warning: missing </h2> before <h3>
PlotTCs.Rd:29:1: Warning: discarding unexpected </h2>
PlotTCs.Rd:23:1: Warning: trimming empty <h3>
PlotTCsRibbon.Rd:19:1: Warning: missing </h2> before <h3>
PlotTCsRibbon.Rd:29:1: Warning: discarding unexpected </h2>
PlotTCsRibbon.Rd:23:1: Warning: trimming empty <h3>
exampleData.Rd:19:1: Warning: missing </h2> before <h3>
exampleData.Rd:29:1: Warning: discarding unexpected </h2>
exampleData.Rd:23:1: Warning: trimming empty <h3>
ggPlotMultiDensities.Rd:19:1: Warning: missing </h2> before <h3>
ggPlotMultiDensities.Rd:29:1: Warning: discarding unexpected </h2>
ggPlotMultiDensities.Rd:23:1: Warning: trimming empty <h3>
testData.Rd:19:1: Warning: missing </h2> before <h3>
testData.Rd:29:1: Warning: discarding unexpected </h2>
testData.Rd:23:1: Warning: trimming empty <h3>
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 NOTEs