• using R Under development (unstable) (2025-07-13 r88407)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b1)     Debian flang-new version 19.1.7 (3+b1)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘DendroSync/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘DendroSync’ version ‘0.1.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Josu G. Alday <josucham@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = c("Josu", "G."),                       family = "Alday",                       role = c("aut", "cre"),                       email = "josucham@gmail.com",                       comment = c(ORCID = "0000-0001-7510-8655")),                person(given = c("Tatiana", "A."),                       family = "Shestakova",                       role = "aut",                       comment = c(ORCID = "0000-0002-5605-0299")),                person(given = c("Victor", "Resco"),                       family = "de Dios",                       role = "aut",                       comment = c(ORCID = "0000-0002-5721-1656")),                person(given = "Jordi",                       family = "Voltas",                       role = "aut",                       comment = c(ORCID = "0000-0003-4051-1158"))) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘DendroSync’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/14s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) conifersIP.Rd:9: Lost braces; missing escapes or markup?      9 | \code{conifersIP} {has following variables:}        | ^ checkRd: (-1) conifersIP.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) conifersIP.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) conifersIP.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) conifersIP.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) conifersIP.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) sync.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) sync.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   dendro.varcov.Rd: varFunc, varIdent, lmeObject Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [46s/61s] OK Examples with CPU (user + system) or elapsed time > 5s                user system elapsed dendro.varcov 4.706 0.008 6.443 sync 4.491 0.000 6.321 gen.het.aSE 3.514 0.008 5.024
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 NOTEs