Install log for 'DNAtools'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘DNAtools’ ...
** package ‘DNAtools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.0 (rc4-1)’
using C++11
make[1]: Entering directory '/tmp/Rtmp5S9AOZ/R.INSTALL1edd616c708925/DNAtools/src'
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c RcppExports.cpp -o RcppExports.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c class_DNTRare.cpp -o class_DNTRare.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c compare-utils.cpp -o compare-utils.o
compare-utils.cpp:107:20: warning: object backing the pointer will be destroyed at the end of the full-expression [-Wdangling-gsl]
  107 |   int *pnProf1 = &(Rcpp::as<std::vector<int> >(prof1)[0]); // this should replace INTEGER(prof1)
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compare-utils.cpp:108:20: warning: object backing the pointer will be destroyed at the end of the full-expression [-Wdangling-gsl]
  108 |   int *pnProf2 = &(Rcpp::as<std::vector<int> >(prof2)[0]);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c compare.cpp -o compare.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c compare_threaded.cpp -o compare_threaded.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c number_of_alleles.cpp -o number_of_alleles.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c profile.cpp -o profile.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c rare_prob.cpp -o rare_prob.o
clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o DNAtools.so RcppExports.o class_DNTRare.o compare-utils.o compare.o compare_threaded.o number_of_alleles.o profile.o rare_prob.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp5S9AOZ/R.INSTALL1edd616c708925/DNAtools/src'
make[1]: Entering directory '/tmp/Rtmp5S9AOZ/R.INSTALL1edd616c708925/DNAtools/src'
make[1]: Leaving directory '/tmp/Rtmp5S9AOZ/R.INSTALL1edd616c708925/DNAtools/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-DNAtools/00new/DNAtools/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DNAtools)