Install log for 'DIFM'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘DIFM’ ...
** this is package ‘DIFM’ version ‘1.0’
** package ‘DIFM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (7)’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8tqXJk/R.INSTALL30f35e6848d945/DIFM/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c B.simulation.cpp -o B.simulation.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c W.simulation.cpp -o W.simulation.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c X.simulation.cpp -o X.simulation.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c marginal.d.cpp -o marginal.d.o
marginal.d.cpp:156:76: warning: 'from<double, arma::Glue<arma::Glue<arma::subview_row<double>, arma::Op<arma::Mat<double>, arma::op_inv_spd_default>, arma::glue_times>, arma::Col<double>, arma::glue_times>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  156 |     double log_det_Q0 = arma::log_det_sympd(Q.slice(0)) + conv_to<double>::from(e.row(0)*inv_sympd(Q.slice(0))*conv_to<colvec>::from(e.row(0)));
      |                                                                            ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Glue<arma::Glue<arma::subview_row<double>, arma::Op<arma::Mat<double>, arma::op_inv_spd_default>, arma::glue_times>, arma::Col<double>, arma::glue_times>>' has been explicitly marked deprecated here
   33 |   [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
      |     ^
marginal.d.cpp:169:74: warning: 'from<double, arma::Glue<arma::Glue<arma::subview_row<double>, arma::Op<arma::Mat<double>, arma::op_inv_spd_default>, arma::glue_times>, arma::Col<double>, arma::glue_times>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  169 |       double log_det_Qtt = log_det_sympd(Q.slice(tt)) + conv_to<double>::from(e.row(tt)*inv_sympd(Q.slice(tt))*conv_to<colvec>::from(e.row(tt)));
      |                                                                          ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Glue<arma::Glue<arma::subview_row<double>, arma::Op<arma::Mat<double>, arma::op_inv_spd_default>, arma::glue_times>, arma::Col<double>, arma::glue_times>>' has been explicitly marked deprecated here
   33 |   [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
      |     ^
marginal.d.cpp:190:121: warning: 'from<double, arma::Glue<arma::Glue<arma::Op<arma::eGlue<arma::Col<double>, arma::Col<double>, arma::eglue_minus>, arma::op_htrans>, arma::Op<arma::Mat<double>, arma::op_pinv_default>, arma::glue_times>, arma::eGlue<arma::Col<double>, arma::Col<double>, arma::eglue_minus>, arma::glue_times>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  190 |       double log_b_mar = -(R-2-i)/2*log(2*M_PI) - 0.5*accu(log(b_Hplus_eigval(span(1, R-i-2)))) - 0.5* conv_to<double>::from(trans(conv_to<colvec>::from(Bnow(span(i+1, R-1))) - b_b) * pinv(b_Hplus) * (conv_to<colvec>::from(Bnow(span(i+1, R-1))) - b_b));
      |                                                                                                                         ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Glue<arma::Glue<arma::Op<arma::eGlue<arma::Col<double>, arma::Col<double>, arma::eglue_minus>, arma::op_htrans>, arma::Op<arma::Mat<double>, arma::op_pinv_default>, arma::glue_times>, arma::eGlue<arma::Col<double>, arma::Col<double>, arma::eglue_minus>, arma::glue_times>>' has been explicitly marked deprecated here
   33 |   [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
      |     ^
3 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c sigma2.simulation.cpp -o sigma2.simulation.o
sigma2.simulation.cpp:30:59: warning: 'from<double, arma::Glue<arma::subview_row<double>, arma::Col<double>, arma::glue_times>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
   30 |       n_s2_sigma2_aux += pow(data(i,j) - conv_to<double>::from(B.row(j) * conv_to<colvec>::from(X.row(i))), 2.0);
      |                                                           ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Glue<arma::subview_row<double>, arma::Col<double>, arma::glue_times>>' has been explicitly marked deprecated here
   33 |   [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
      |     ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c tau.simulation.cpp -o tau.simulation.o
tau.simulation.cpp:34:55: warning: 'from<double, arma::Glue<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Col<double>, arma::glue_times>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
   34 |     double n_s2_tau_aux = n_s2_tau + conv_to<double>::from(conv_to<rowvec>::from(b_tau) * StateH_tau * conv_to<colvec>::from(b_tau));
      |                                                       ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Glue<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Col<double>, arma::glue_times>>' has been explicitly marked deprecated here
   33 |   [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
      |     ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c theta.simulation.cpp -o theta.simulation.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o DIFM.so B.simulation.o RcppExports.o W.simulation.o X.simulation.o marginal.d.o sigma2.simulation.o tau.simulation.o theta.simulation.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8tqXJk/R.INSTALL30f35e6848d945/DIFM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8tqXJk/R.INSTALL30f35e6848d945/DIFM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8tqXJk/R.INSTALL30f35e6848d945/DIFM/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-DIFM/00new/DIFM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DIFM)