• using R Under development (unstable) (2025-07-02 r88374)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b1)     Debian flang-new version 19.1.7 (3+b1)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘ConnMatTools/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ConnMatTools’ version ‘0.3.5’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘David M. Kaplan <dmkaplan2000@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = c("David", "M."),                       family = "Kaplan",                       role = c("cre", "aut"),                       email = "dmkaplan2000@gmail.com"),                person(given = "Marco",                       family = "Andrello",                       role = "ctb",                       email = "marco.andrello@gmail.com")) as necessary. Found the following URLs which should use \doi (with the DOI name only):   File ‘chile.loco.Rd’:     http://dx.doi.org/10.1016/j.pocean.2014.03.011   File ‘damselfish.lods.Rd’:     http://dx.doi.org/10.1046/j.1471-8286.2003.00439.x
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ConnMatTools’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/11s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [21s/34s] OK Examples with CPU (user + system) or elapsed time > 5s                                user system elapsed d.rel.conn.multiple 7.960 0.046 11.365 d.rel.conn.multinomial.unnorm 5.516 0.117 10.256
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [19s/26s] OK   Running ‘test.connectivity_estimation.R’ [0s/1s]   Running ‘test.connectivity_estimation.beta.prior.R’ [0s/1s]   Running ‘test.connectivity_estimation.distributions.R’ [1s/1s]   Running ‘test.connectivity_estimation.multinomial.R’ [6s/7s]   Running ‘test.connectivity_estimation.multiple.R’ [9s/11s]   Running ‘test.dpr_model.R’ [1s/1s]   Running ‘test.laplacianConnMat.R’ [0s/1s]   Running ‘test.marked.egg.fraction.R’ [0s/1s]   Running ‘test.optimalSplitConnMat.R’ [1s/1s]   Running ‘test.retentionStats.R’ [0s/1s]
• checking PDF version of manual ... [7s/11s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE