- using R Under development (unstable) (2025-06-25 r88360)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3+b1)
Debian flang-new version 19.1.7 (3+b1)
- running under: Debian GNU/Linux 13 (trixie)
- using session charset: UTF-8
- checking for file ‘ConnMatTools/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ConnMatTools’ version ‘0.3.5’
- checking CRAN incoming feasibility ... [1s/1s] NOTE
Maintainer: ‘David M. Kaplan <dmkaplan2000@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("David", "M."),
family = "Kaplan",
role = c("cre", "aut"),
email = "dmkaplan2000@gmail.com"),
person(given = "Marco",
family = "Andrello",
role = "ctb",
email = "marco.andrello@gmail.com"))
as necessary.
Found the following URLs which should use \doi (with the DOI name only):
File ‘chile.loco.Rd’:
http://dx.doi.org/10.1016/j.pocean.2014.03.011
File ‘damselfish.lods.Rd’:
http://dx.doi.org/10.1046/j.1471-8286.2003.00439.x
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘ConnMatTools’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/8s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [21s/33s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
d.rel.conn.multiple 7.937 0.036 11.320
d.rel.conn.multinomial.unnorm 5.604 0.077 9.578
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [20s/27s] OK
Running ‘test.connectivity_estimation.R’ [0s/1s]
Running ‘test.connectivity_estimation.beta.prior.R’ [0s/1s]
Running ‘test.connectivity_estimation.distributions.R’ [1s/1s]
Running ‘test.connectivity_estimation.multinomial.R’ [6s/8s]
Running ‘test.connectivity_estimation.multiple.R’ [8s/11s]
Running ‘test.dpr_model.R’ [1s/1s]
Running ‘test.laplacianConnMat.R’ [0s/1s]
Running ‘test.marked.egg.fraction.R’ [0s/1s]
Running ‘test.optimalSplitConnMat.R’ [2s/3s]
Running ‘test.retentionStats.R’ [0s/0s]
- checking PDF version of manual ... [8s/12s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE