• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.7 (1)     Debian flang version 21.1.7 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘CoSMoS/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘CoSMoS’ version ‘2.1.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CoSMoS’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/6s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/6s] OK
• checking whether the package can be unloaded cleanly ... [4s/5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/6s] OK
• checking loading without being on the library search path ... [4s/6s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [27s/35s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [35s/48s] ERROR Running examples in ‘CoSMoS-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: seasonalAR > ### Title: Seasonal AR model > ### Aliases: seasonalAR > ### Keywords: internal > > ### ** Examples > > library(data.table) Attaching package: ‘data.table’ The following object is masked from ‘package:base’:     %notin% > data('precip') > > ## Don't show: > precip <- precip[between(date, as.POSIXct('1990-1-01', format('%Y-%m-%d'), tz = 'America/Regina'), + as.POSIXct('1990-1-10', format('%Y-%m-%d'), tz = 'America/Regina'))] 'between' arguments are all POSIXct but have mismatched tzone attributes: ['', 'America/Regina', 'America/Regina']. The UTC times will be compared. > ## End(Don't show) > x <- seasonalACF(precip, 'month') > > seasonalAR(precip$date, x) Error in `[.data.table`(time, , `:=`(n, .N), by = .(y, s)) :   attempt access index 3/3 in VECTOR_ELT Calls: seasonalAR -> [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [10s/10s] OK   Running ‘testthat.R’ [10s/10s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [217s/271s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘vignette.Rmd’ using rmarkdown Quitting from vignette.Rmd:426-436 [unnamed-chunk-19] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 3/3 in VECTOR_ELT --- Backtrace:     ▆  1. └─CoSMoS::simulateTS(...)  2. └─CoSMoS::seasonalAR(x = seq(from = from, to = to, by = by), ACS = ACS)  3. ├─time[, `:=`(n, .N), by = .(y, s)]  4. └─data.table:::`[.data.table`(time, , `:=`(n, .N), by = .(y, s)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vignette.Rmd' failed with diagnostics: attempt access index 3/3 in VECTOR_ELT --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed:   ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [5s/7s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs