• using R Under development (unstable) (2025-07-06 r88390)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b1)     Debian flang-new version 19.1.7 (3+b1)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘ClustAssess/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ClustAssess’ version ‘1.1.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘monocle3’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ClustAssess’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘Debian clang version 19.1.7 (3+b1)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [46s/60s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [81s/125s] OK Examples with CPU (user + system) or elapsed time > 5s                                                    user system elapsed plot_n_neigh_k_correspondence 7.962 0.055 11.687 plot_n_neigh_ecs 7.741 0.082 12.715 assess_nn_stability 7.341 0.092 12.518 plot_feature_per_resolution_stability_incremental 7.342 0.031 13.559 plot_feature_overall_stability_incremental 7.291 0.000 8.518 assess_clustering_stability 5.851 0.210 6.422 plot_feature_stability_mb_facet 4.393 0.200 10.328 plot_feature_stability_ecs_facet 4.415 0.083 10.671 plot_feature_overall_stability_boxplot 3.847 0.000 5.716
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [47s/65s] OK   Running ‘testthat.R’ [47s/65s]
• checking PDF version of manual ... [7s/12s] OK
• checking HTML version of manual ... [3s/5s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: OK