- using R Under development (unstable) (2025-06-27 r88363)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3+b1)
Debian flang-new version 19.1.7 (3+b1)
- running under: Debian GNU/Linux 13 (trixie)
- using session charset: UTF-8
- checking for file ‘ClustAssess/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ClustAssess’ version ‘1.1.0’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [2s/3s] OK
- checking package namespace information ... OK
- checking package dependencies ... INFO
Package suggested but not available for checking: ‘monocle3’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘ClustAssess’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘Debian clang version 19.1.7 (3+b1)’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the package can be unloaded cleanly ... [3s/5s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [47s/67s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [83s/157s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_n_neigh_ecs 8.137 0.126 15.355
plot_n_neigh_k_correspondence 7.995 0.114 11.227
assess_nn_stability 7.320 0.110 17.034
plot_feature_per_resolution_stability_incremental 7.364 0.044 13.045
plot_feature_overall_stability_incremental 7.314 0.008 14.814
assess_clustering_stability 6.026 0.209 10.343
plot_feature_stability_mb_facet 4.526 0.131 8.304
plot_feature_stability_ecs_facet 4.421 0.097 10.293
assess_feature_stability 4.222 0.066 8.547
plot_feature_overall_stability_boxplot 3.980 0.107 9.017
plot_feature_per_resolution_stability_boxplot 3.829 0.003 7.181
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [48s/90s] OK
Running ‘testthat.R’ [47s/89s]
- checking PDF version of manual ... [7s/10s] OK
- checking HTML version of manual ... [3s/6s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK