• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.7 (1)     Debian flang version 21.1.7 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘BuyseTest/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘BuyseTest’ version ‘3.3.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘BuyseTest’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘Debian clang version 21.1.7 (1)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the package can be unloaded cleanly ... [4s/5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/6s] OK
• checking whether the namespace can be unloaded cleanly ... [5s/6s] OK
• checking loading without being on the library search path ... [4s/7s] OK
• checking whether startup messages can be suppressed ... [4s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [63s/78s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [27s/32s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [108s/80s] ERROR   Running ‘testthat.R’ [108s/79s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > ## * load packages   > library(testthat)   > library(BuyseTest)   Loading required package: Rcpp   BuyseTest version 3.3.4   >   > library(lava)      Attaching package: 'lava'      The following object is masked from 'package:testthat':          compare      > library(data.table)      Attaching package: 'data.table'      The following object is masked from 'package:base':          %notin%      > library(survival)      Attaching package: 'survival'      The following object is masked from 'package:BuyseTest':          brier      > xx <- capture.output(print(veteran))   > library(riskRegression)   riskRegression version 2025.09.17   > library(prodlim)   > library(mvtnorm)   >   > ## * run tests   > ## setwd("~/Documents/GitHub/BuyseTest/tests/")   > ## source("~/Documents/GitHub/BuyseTest/tests/testthat/test-BuyseTest-engine.R")   > test_check("BuyseTest")   Saving _problems/test-BuysePower-92.R   Saving _problems/test-BuysePower-132.R   Saving _problems/test-BuysePower-174.R   Saving _problems/test-BuyseTTEM-34.R   Saving _problems/test-BuyseTest-standardization-184.R   Saving _problems/test-BuyseTest-standardization-212.R   [ FAIL 6 | WARN 0 | SKIP 2 | PASS 1157 ]      ══ Skipped tests (2) ═══════════════════════════════════════════════════════════   • empty test (2): 'test-BuyseTest-previousBug.R:554:1',      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-BuysePower.R:92:9'): 1 tte endpoint - Gehan ────────────────────   Error in ``[.data.table`(d, , `:=`(id, 1:.N), by = "treatment")`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. ├─d[, `:=`(id, 1:.N), by = "treatment"] at test-BuysePower.R:92:9    2. └─data.table:::`[.data.table`(d, , `:=`(id, 1:.N), by = "treatment") at test-BuysePower.R:92:9   ── Error ('test-BuysePower.R:132:9'): 1 tte endpoint - Peron ───────────────────   Error in ``[.data.table`(d, , `:=`(id, 1:.N), by = "treatment")`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. ├─d[, `:=`(id, 1:.N), by = "treatment"] at test-BuysePower.R:132:9    2. └─data.table:::`[.data.table`(d, , `:=`(id, 1:.N), by = "treatment") at test-BuysePower.R:132:9   ── Error ('test-BuysePower.R:174:9'): Multiple endpoints ───────────────────────   Error in ``[.data.table`(d, , `:=`(id, 1:.N), by = "treatment")`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. ├─d[, `:=`(id, 1:.N), by = "treatment"] at test-BuysePower.R:174:9    2. └─data.table:::`[.data.table`(d, , `:=`(id, 1:.N), by = "treatment") at test-BuysePower.R:174:9   ── Error ('test-BuyseTTEM.R:34:1'): (code run outside of `test_that()`) ────────   Error in ``[.data.table`(dt, , `:=`(last, eventtime == max(eventtime)), by = c("treatment", "toxicity"))`: attempt access index 6/6 in VECTOR_ELT   Backtrace:       ▆    1. ├─...[] at test-BuyseTTEM.R:34:1    2. └─data.table:::`[.data.table`(...) at test-BuyseTTEM.R:34:1   ── Error ('test-BuyseTest-standardization.R:184:5'): BuyseTest - standarization (second order, binary outcome, balanced) ──   Error in ``[.data.table`(mytable, , `:=`(m.X, length(unique(index.0))), by = "strata")`: attempt access index 9/9 in VECTOR_ELT   Backtrace:       ▆    1. ├─mytable[, `:=`(m.X, length(unique(index.0))), by = "strata"] at test-BuyseTest-standardization.R:184:5    2. └─data.table:::`[.data.table`(...) at test-BuyseTest-standardization.R:184:5   ── Error ('test-BuyseTest-standardization.R:212:5'): BuyseTest - standarization (second order, binary outcome, unbalanced) ──   Error in ``[.data.table`(mytableUB, , `:=`(m.X, length(unique(index.0))), by = "strata")`: attempt access index 9/9 in VECTOR_ELT   Backtrace:       ▆    1. ├─mytableUB[, `:=`(m.X, length(unique(index.0))), by = "strata"] at test-BuyseTest-standardization.R:212:5    2. └─data.table:::`[.data.table`(...) at test-BuyseTest-standardization.R:212:5      [ FAIL 6 | WARN 0 | SKIP 2 | PASS 1157 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [8s/10s] OK
• checking HTML version of manual ... [8s/12s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR