* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘BDgraph’ ...
** package ‘BDgraph’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 17.0.6 (5)’
using C++ compiler: ‘Debian clang version 17.0.6 (5)’
using C++11
make[1]: Entering directory '/tmp/RtmpeAPBC1/R.INSTALL2e90f135216af/BDgraph/src'
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c BDgraph_init.c -o BDgraph_init.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c copula.cpp -o copula.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c gcgm_DMH.cpp -o gcgm_DMH.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c gcgm_bd.cpp -o gcgm_bd.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c gcgm_dw_bd.cpp -o gcgm_dw_bd.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c ggm_DMH.cpp -o ggm_DMH.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c ggm_bd.cpp -o ggm_bd.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c ggm_mpl_bd.cpp -o ggm_mpl_bd.o
ggm_mpl_bd.cpp:363:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
  363 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^
ggm_mpl_bd.cpp:703:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
  703 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^
2 warnings generated.
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c gm_mpl_Hill_Climb.cpp -o gm_mpl_Hill_Climb.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c gm_mpl_bd_dis.cpp -o gm_mpl_bd_dis.o
gm_mpl_bd_dis.cpp:725:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
  725 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^
gm_mpl_bd_dis.cpp:1089:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
 1089 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^
gm_mpl_bd_dis.cpp:1621:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
 1621 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^
gm_mpl_bd_dis.cpp:1947:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
 1947 |         double sum_weights = 0.0, weight_C, sum_rates;
      |                ^
4 warnings generated.
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c gm_rj.cpp -o gm_rj.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c matrix.cpp -o matrix.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c omp_set_num_cores.cpp -o omp_set_num_cores.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c rgwish.cpp -o rgwish.o
clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c tgm_bd.cpp -o tgm_bd.o
clang++-17 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o BDgraph.so BDgraph_init.o copula.o gcgm_DMH.o gcgm_bd.o gcgm_dw_bd.o ggm_DMH.o ggm_bd.o ggm_mpl_bd.o gm_mpl_Hill_Climb.o gm_mpl_bd_dis.o gm_rj.o matrix.o omp_set_num_cores.o rgwish.o tgm_bd.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-17/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpeAPBC1/R.INSTALL2e90f135216af/BDgraph/src'
make[1]: Entering directory '/tmp/RtmpeAPBC1/R.INSTALL2e90f135216af/BDgraph/src'
make[1]: Leaving directory '/tmp/RtmpeAPBC1/R.INSTALL2e90f135216af/BDgraph/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-BDgraph/00new/BDgraph/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BDgraph)