* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘BAS’ ...
** this is package ‘BAS’ version ‘2.0.2’
** package ‘BAS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 21.1.8 (1)’
using Fortran compiler: ‘Debian flang version 21.1.8 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ0hpVf/R.INSTALL3414ce1c72ad99/BAS/src'
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c E_ZS.c -o E_ZS.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MH-funs.c -o MH-funs.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ZS_approx_full_np.c -o ZS_approx_full_np.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ZS_approx_null_np.c -o ZS_approx_null_np.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c amcmc-funs.c -o amcmc-funs.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayesglm.c -o bayesglm.o
bayesglm.c:62:17: warning: variable 'betapriorfamily' set but not used [-Wunused-but-set-variable]
62 | betapriorptr *betapriorfamily;
| ^
1 warning generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayesreg.c -o bayesreg.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c betapriorfamily.c -o betapriorfamily.o
betapriorfamily.c:239:38: warning: unused variable 'u' [-Wunused-variable]
239 | double a, b, s, r, v, theta, n, p, u, shrinkage;
| ^
1 warning generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cch.c -o cch.o
flang-21 -fpic -g -O2 -c dch1up.f -o dch1up.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c family.c -o family.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_deterministic.c -o glm_deterministic.o
glm_deterministic.c:67:16: warning: unused variable 'shrinkage_m' [-Wunused-variable]
67 | double *probs,shrinkage_m,logmargy;
| ^~~~~~~~~~~
glm_deterministic.c:67:28: warning: unused variable 'logmargy' [-Wunused-variable]
67 | double *probs,shrinkage_m,logmargy;
| ^~~~~~~~
2 warnings generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_fit.c -o glm_fit.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_mcmc.c -o glm_mcmc.o
glm_mcmc.c:17:39: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable]
17 | double *probs, MH=0.0, prior_m=1.0, shrinkage_m, logmargy, postold, postnew;
| ^
1 warning generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_mcmc_grow.c -o glm_mcmc_grow.o
glm_mcmc_grow.c:117:38: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable]
117 | double *probs, MH=0.0, prior_m=1.0, shrinkage_m, logmarg_m, postold, postnew;
| ^
1 warning generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_mcmcbas.c -o glm_mcmcbas.o
glm_mcmcbas.c:54:37: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable]
54 | double *probs, MH=0.0, prior_m=1.0,shrinkage_m, logmargy, postold, postnew;
| ^
1 warning generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_sampleworep.c -o glm_sampleworep.o
glm_sampleworep.c:121:16: warning: variable 'logmargy' set but not used [-Wunused-but-set-variable]
121 | double *probs,logmargy, shrinkage_m;
| ^
glm_sampleworep.c:121:26: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable]
121 | double *probs,logmargy, shrinkage_m;
| ^
2 warnings generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_sampleworep_grow.c -o glm_sampleworep_grow.o
glm_sampleworep_grow.c:101:16: warning: variable 'logmargy' set but not used [-Wunused-but-set-variable]
101 | double *probs,logmargy, shrinkage_m;
| ^
glm_sampleworep_grow.c:101:26: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable]
101 | double *probs,logmargy, shrinkage_m;
| ^
2 warnings generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hg_approx_null_np.c -o hg_approx_null_np.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hyp1F1.c -o hyp1F1.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hyp2f1.c -o hyp2f1.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hypergeometric1F1.c -o hypergeometric1F1.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hypergeometric2F1.c -o hypergeometric2F1.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_amcmc.c -o lm_amcmc.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_amcmc_growable.c -o lm_amcmc_growable.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_deterministic.c -o lm_deterministic.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_mcmc.c -o lm_mcmc.o
lm_mcmc.c:137:6: warning: unused variable 'k' [-Wunused-variable]
137 | int k = LENGTH(modelprobs);
| ^
1 warning generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_mcmc_grow.c -o lm_mcmc_grow.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_mcmcbas.c -o lm_mcmcbas.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_sampleworep-grow.c -o lm_sampleworep-grow.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_sampleworep.c -o lm_sampleworep.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mem.c -o mem.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c model_probabilities.c -o model_probabilities.o
model_probabilities.c:127:22: warning: unused variable 'n' [-Wunused-variable]
127 | int m, j, *model, *n;
| ^
model_probabilities.c:129:17: warning: unused variable 'probNotInS' [-Wunused-variable]
129 | double *beta, probNotInS = 1.0;
| ^~~~~~~~~~
model_probabilities.c:129:11: warning: unused variable 'Rf_beta' [-Wunused-variable]
129 | double *beta, probNotInS = 1.0;
| ^~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/include/Rmath.h:221:15: note: expanded from macro 'beta'
221 | #define beta Rf_beta
| ^~~~~~~
3 warnings generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mtherr.c -o mtherr.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c resizeVectors.c -o resizeVectors.o
resizeVectors.c:86:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
86 | break;
| ^
resizeVectors.c:78:3: note: previous statement is here
78 | for (i = 0; i < len_new; i++)
| ^
resizeVectors.c:94:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
94 | break;
| ^
resizeVectors.c:88:3: note: previous statement is here
88 | for (i = 0; i < len_new; i++)
| ^
resizeVectors.c:106:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
106 | break;
| ^
resizeVectors.c:102:3: note: previous statement is here
102 | for (i = 0; i < len_new; i++)
| ^
resizeVectors.c:114:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
114 | break;
| ^
resizeVectors.c:108:3: note: previous statement is here
108 | for (i = 0; i < len_new; i++)
| ^
4 warnings generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tree_structures.c -o tree_structures.o
clang-21 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o BAS.so E_ZS.o MH-funs.o ZS_approx_full_np.o ZS_approx_null_np.o amcmc-funs.o bayesglm.o bayesreg.o betapriorfamily.o cch.o dch1up.o family.o glm_deterministic.o glm_fit.o glm_mcmc.o glm_mcmc_grow.o glm_mcmcbas.o glm_sampleworep.o glm_sampleworep_grow.o hg_approx_null_np.o hyp1F1.o hyp2f1.o hypergeometric1F1.o hypergeometric2F1.o init.o lm_amcmc.o lm_amcmc_growable.o lm_deterministic.o lm_mcmc.o lm_mcmc_grow.o lm_mcmcbas.o lm_sampleworep-grow.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o resizeVectors.o tree_structures.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ0hpVf/R.INSTALL3414ce1c72ad99/BAS/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ0hpVf/R.INSTALL3414ce1c72ad99/BAS/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ0hpVf/R.INSTALL3414ce1c72ad99/BAS/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-BAS/00new/BAS/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BAS)