Maintainer: ‘Javier Tabima <tabimaj@oregonstate.edu>’

Found the following (possibly) invalid file URIs:
  URI: eddylab.org/software/hmmer3/3.1b2/Userguide.pdf
    From: inst/doc/effectR.html
  URI: mafft.cbrc.jp/alignment/software/
    From: README.md
  URI: eddylab.org/software/hmmer3/3.1b2/Userguide.pdf
    From: README.md
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  regex.search.Rd: read.fasta
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Javier Tabima <tabimaj@oregonstate.edu>’

Found the following (possibly) invalid file URIs:
  URI: eddylab.org/software/hmmer3/3.1b2/Userguide.pdf
    From: inst/doc/effectR.html
  URI: mafft.cbrc.jp/alignment/software/
    From: README.md
  URI: eddylab.org/software/hmmer3/3.1b2/Userguide.pdf
    From: README.md
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  regex.search.Rd: read.fasta
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Namespace in Imports field not imported from: ‘rmarkdown’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘rmarkdown’
  All declared Imports should be used.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  regex.search.Rd: read.fasta
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  regex.search.Rd: read.fasta
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  regex.search.Rd: read.fasta
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  regex.search.Rd: read.fasta
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.