Error(s) in re-building vignettes:
  ...
--- re-building ‘rbiouml.Rnw’ using Sweave
Loading required package: RCurl
Loading required package: RJSONIO

Error: processing vignette 'rbiouml.Rnw' failed with diagnostics:
 chunk 5 
Error in queryJSON("/web/table/createTable", params = c(de = path, columns = toJSON(columns),  : 
  Error communicating with SQL server.

--- failed re-building ‘rbiouml.Rnw’

SUMMARY: processing the following file failed:
  ‘rbiouml.Rnw’

Error: Vignette re-building failed.
Execution halted
Errors in running code in vignettes:
when running code in ‘rbiouml.Rnw’
  ...

> x[, 5] <- x[, 3] + x[, 4]

> biouml.put("data/Collaboration/Demo/tmp/exp_data_1_sum", 
+     x)

  When sourcing ‘rbiouml.R’:
Error: Cannot create collection data/Collaboration/Demo/tmp/exp_data_1_sum
Reason: Connection to SQL server cannot be established. URL: jdbc:mysql://mysql-biouml:3306/research_Demo?allowLoadLocalInfile=true
Execution halted

  ‘rbiouml.Rnw’... failed
Error(s) in re-building vignettes:
  ...
--- re-building ‘rbiouml.Rnw’ using Sweave
Loading required package: RCurl
Loading required package: RJSONIO

Error: processing vignette 'rbiouml.Rnw' failed with diagnostics:
 chunk 5 
Error in queryJSON("/web/table/createTable", params = c(de = path, columns = toJSON(columns),  : 
  Cannot create collection data/Collaboration/Demo/tmp/exp_data_1_sum
Reason: Connection to SQL server cannot be established. URL: jdbc:mysql://mysql-biouml:3306/research_Demo?allowLoadLocalInfile=true

--- failed re-building ‘rbiouml.Rnw’

SUMMARY: processing the following file failed:
  ‘rbiouml.Rnw’

Error: Vignette re-building failed.
Execution halted

Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/fedmatch.Rcheck/00install.out’ for details.
Namespace in Imports field not imported from: ‘gtools’
  All declared Imports should be used.
Namespace in Imports field not imported from: 'gtools'
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘gtools’
  All declared Imports should be used.
Installation failed.
See ‘/Volumes/Builds/packages/big-sur-arm64/results/4.1/fedmatch.Rcheck/00install.out’ for details.
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.1/fedmatch.Rcheck/00install.out’ for details.
Installation failed.
See ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/fedmatch.Rcheck/00install.out’ for details.