Error(s) in re-building vignettes:
  ...
--- re-building ‘gsea.Rmd’ using rmarkdown
Error: processing vignette 'gsea.Rmd' failed with diagnostics:
The closing fence on line 87 ("````") in gsea.Rmd does not match the opening fence "```" on line 85. You are recommended to fix either the opening or closing fence of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote). See https://yihui.org/en/2021/10/unbalanced-delimiters/ for more info.
--- failed re-building ‘gsea.Rmd’

--- re-building ‘interpreting.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/liger.Rcheck/vign_test/liger/vignettes/interpreting_files/figure-html/unnamed-chunk-2-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8741 bytes
Input file size = 9611 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7175
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7175

Output IDAT size = 7175 bytes (1566 bytes decrease)
Output file size = 7253 bytes (2358 bytes = 24.53% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/liger.Rcheck/vign_test/liger/vignettes/interpreting_files/figure-html/unnamed-chunk-5-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 65957 bytes
Input file size = 66131 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 53106
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 53106

Output IDAT size = 53106 bytes (12851 bytes decrease)
Output file size = 53184 bytes (12947 bytes = 19.58% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/liger.Rcheck/vign_test/liger/vignettes/interpreting_files/figure-html/unnamed-chunk-6-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64262 bytes
Input file size = 64424 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52688
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52688

Output IDAT size = 52688 bytes (11574 bytes decrease)
Output file size = 52766 bytes (11658 bytes = 18.10% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/liger.Rcheck/vign_test/liger/vignettes/interpreting_files/figure-html/unnamed-chunk-7-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 73543 bytes
Input file size = 73717 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61626
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61626

Output IDAT size = 61626 bytes (11917 bytes decrease)
Output file size = 61704 bytes (12013 bytes = 16.30% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/liger.Rcheck/vign_test/liger/vignettes/interpreting_files/figure-html/unnamed-chunk-8-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 74745 bytes
Input file size = 74931 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 63424
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 63424

Output IDAT size = 63424 bytes (11321 bytes decrease)
Output file size = 63502 bytes (11429 bytes = 15.25% decrease)

--- finished re-building ‘interpreting.Rmd’

--- re-building ‘permpvals.Rmd’ using rmarkdown
Error: processing vignette 'permpvals.Rmd' failed with diagnostics:
The closing fence on line 69 ("````") in permpvals.Rmd does not match the opening fence "```" on line 67. You are recommended to fix either the opening or closing fence of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote). See https://yihui.org/en/2021/10/unbalanced-delimiters/ for more info.
--- failed re-building ‘permpvals.Rmd’

--- re-building ‘simulation.Rmd’ using rmarkdown
Error: processing vignette 'simulation.Rmd' failed with diagnostics:
The closing fence on line 93 ("````") in simulation.Rmd does not match the opening fence "```" on line 91. You are recommended to fix either the opening or closing fence of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote). See https://yihui.org/en/2021/10/unbalanced-delimiters/ for more info.
--- failed re-building ‘simulation.Rmd’

SUMMARY: processing the following files failed:
  ‘gsea.Rmd’ ‘permpvals.Rmd’ ‘simulation.Rmd’

Error: Vignette re-building failed.
Execution halted