Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Specified C++11: please drop specification unless essential
Running examples in ‘bcTSNE-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bctsne
> ### Title: Calculate BC t-SNE by orthogonal gradient descent
> ### Aliases: bctsne
> 
> ### ** Examples
> 
> ## Create small simulated dataset, A, with embeded batch effects
> set.seed(2731)
> kRid <- 20
> p    <- 100
> n    <- 200
> 
> W <- matrix(rnorm(p*kRid), kRid)
> S <- matrix(rnorm(n*kRid), n)
> z <- sample(1:3, rep = TRUE, size = n)
> Z <- model.matrix( ~ -1 + as.factor(z))
> l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
> A <- (S - Z %*% t(l) ) %*% W
> 
> ## Scale A to give input, X 
> X <- scale(A)
> 
> resUnadj <- Rtsne::Rtsne(X)                 ## Standard t-SNE
> resAdj   <- bctsne(X = X, Z = Z, k = 10)    ## Batch-corrected t-SNE
Warning in type.convert.default(maxIter) :
  'as.is' should be specified by the caller; using TRUE
Error in bctsne(X = X, Z = Z, k = 10) : 
  DLL requires the use of native symbols
Execution halted
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Specified C++11: please drop specification unless essential
Running examples in ‘bcTSNE-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bctsne
> ### Title: Calculate BC t-SNE by orthogonal gradient descent
> ### Aliases: bctsne
> 
> ### ** Examples
> 
> ## Create small simulated dataset, A, with embeded batch effects
> set.seed(2731)
> kRid <- 20
> p    <- 100
> n    <- 200
> 
> W <- matrix(rnorm(p*kRid), kRid)
> S <- matrix(rnorm(n*kRid), n)
> z <- sample(1:3, rep = TRUE, size = n)
> Z <- model.matrix( ~ -1 + as.factor(z))
> l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
> A <- (S - Z %*% t(l) ) %*% W
> 
> ## Scale A to give input, X 
> X <- scale(A)
> 
> resUnadj <- Rtsne::Rtsne(X)                 ## Standard t-SNE
> resAdj   <- bctsne(X = X, Z = Z, k = 10)    ## Batch-corrected t-SNE
Warning in type.convert.default(maxIter) :
  'as.is' should be specified by the caller; using TRUE
Error in bctsne(X = X, Z = Z, k = 10) : 
  DLL requires the use of native symbols
Execution halted
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘splatter’
  All declared Imports should be used.
Running examples in ‘bcTSNE-Ex.R’ failed
The error most likely occurred in:

> ### Name: bctsne
> ### Title: Calculate BC t-SNE by orthogonal gradient descent
> ### Aliases: bctsne
> 
> ### ** Examples
> 
> ## Create small simulated dataset, A, with embeded batch effects
> set.seed(2731)
> kRid <- 20
> p    <- 100
> n    <- 200
> 
> W <- matrix(rnorm(p*kRid), kRid)
> S <- matrix(rnorm(n*kRid), n)
> z <- sample(1:3, rep = TRUE, size = n)
> Z <- model.matrix( ~ -1 + as.factor(z))
> l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
> A <- (S - Z %*% t(l) ) %*% W
> 
> ## Scale A to give input, X 
> X <- scale(A)
> 
> resUnadj <- Rtsne::Rtsne(X)                 ## Standard t-SNE
> resAdj   <- bctsne(X = X, Z = Z, k = 10)    ## Batch-corrected t-SNE
Warning in type.convert.default(maxIter) :
  'as.is' should be specified by the caller; using TRUE
Error in bctsne(X = X, Z = Z, k = 10) : 
  DLL requires the use of native symbols
Execution halted
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘splatter’
  All declared Imports should be used.
Running examples in ‘bcTSNE-Ex.R’ failed
The error most likely occurred in:

> ### Name: bctsne
> ### Title: Calculate BC t-SNE by orthogonal gradient descent
> ### Aliases: bctsne
> 
> ### ** Examples
> 
> ## Create small simulated dataset, A, with embeded batch effects
> set.seed(2731)
> kRid <- 20
> p    <- 100
> n    <- 200
> 
> W <- matrix(rnorm(p*kRid), kRid)
> S <- matrix(rnorm(n*kRid), n)
> z <- sample(1:3, rep = TRUE, size = n)
> Z <- model.matrix( ~ -1 + as.factor(z))
> l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
> A <- (S - Z %*% t(l) ) %*% W
> 
> ## Scale A to give input, X 
> X <- scale(A)
> 
> resUnadj <- Rtsne::Rtsne(X)                 ## Standard t-SNE
> resAdj   <- bctsne(X = X, Z = Z, k = 10)    ## Batch-corrected t-SNE
Warning in type.convert.default(maxIter) :
  'as.is' should be specified by the caller; using TRUE
Error in bctsne(X = X, Z = Z, k = 10) : 
  DLL requires the use of native symbols
Execution halted
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Specified C++11: please drop specification unless essential
Running examples in 'bcTSNE-Ex.R' failed
The error most likely occurred in:

> ### Name: bctsne
> ### Title: Calculate BC t-SNE by orthogonal gradient descent
> ### Aliases: bctsne
> 
> ### ** Examples
> 
> ## Create small simulated dataset, A, with embeded batch effects
> set.seed(2731)
> kRid <- 20
> p    <- 100
> n    <- 200
> 
> W <- matrix(rnorm(p*kRid), kRid)
> S <- matrix(rnorm(n*kRid), n)
> z <- sample(1:3, rep = TRUE, size = n)
> Z <- model.matrix( ~ -1 + as.factor(z))
> l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
> A <- (S - Z %*% t(l) ) %*% W
> 
> ## Scale A to give input, X 
> X <- scale(A)
> 
> resUnadj <- Rtsne::Rtsne(X)                 ## Standard t-SNE
> resAdj   <- bctsne(X = X, Z = Z, k = 10)    ## Batch-corrected t-SNE
Warning in type.convert.default(maxIter) :
  'as.is' should be specified by the caller; using TRUE
Error in bctsne(X = X, Z = Z, k = 10) : 
  DLL requires the use of native symbols
Execution halted
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Specified C++11: please drop specification unless essential
Running examples in ‘bcTSNE-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bctsne
> ### Title: Calculate BC t-SNE by orthogonal gradient descent
> ### Aliases: bctsne
> 
> ### ** Examples
> 
> ## Create small simulated dataset, A, with embeded batch effects
> set.seed(2731)
> kRid <- 20
> p    <- 100
> n    <- 200
> 
> W <- matrix(rnorm(p*kRid), kRid)
> S <- matrix(rnorm(n*kRid), n)
> z <- sample(1:3, rep = TRUE, size = n)
> Z <- model.matrix( ~ -1 + as.factor(z))
> l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
> A <- (S - Z %*% t(l) ) %*% W
> 
> ## Scale A to give input, X 
> X <- scale(A)
> 
> resUnadj <- Rtsne::Rtsne(X)                 ## Standard t-SNE
> resAdj   <- bctsne(X = X, Z = Z, k = 10)    ## Batch-corrected t-SNE
Warning in type.convert.default(maxIter) :
  'as.is' should be specified by the caller; using TRUE
Error in bctsne(X = X, Z = Z, k = 10) : 
  DLL requires the use of native symbols
Execution halted
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Installation failed.
See ‘/Volumes/Builds/packages/big-sur-arm64/results/4.2/bcTSNE.Rcheck/00install.out’ for details.
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Namespace in Imports field not imported from: ‘splatter’
  All declared Imports should be used.
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Namespace in Imports field not imported from: ‘splatter’
  All declared Imports should be used.
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'
Namespace in Imports field not imported from: ‘splatter’
  All declared Imports should be used.
Packages suggested but not available for checking:
  'kBET', 'lisi', 'dlfUtils'