- using R version 4.4.0 alpha (2024-03-31 r86238)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.4
- using session charset: UTF-8
- checking for file ‘pharmr/DESCRIPTION’ ... OK
- this is package ‘pharmr’ version ‘0.96.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘pharmr’ can be installed ... [4s/5s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking whether startup messages can be suppressed ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/4s] OK
- checking Rd files ... [0s/1s] NOTE
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
44 | {coveff} = 1 + {theta} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
44 | {coveff} = 1 + {theta} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
44 | {coveff} = 1 + {theta} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
44 | {coveff} = 1 + {theta} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:60: Lost braces; missing escapes or markup?
60 | {coveff} = 1
| ^
checkRd: (-1) add_covariate_effect.Rd:67: Lost braces; missing escapes or markup?
67 | {coveff} = 1 + {theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:67: Lost braces; missing escapes or markup?
67 | {coveff} = 1 + {theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
79 | {coveff} = 1 + {theta1} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
79 | {coveff} = 1 + {theta1} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
79 | {coveff} = 1 + {theta1} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
79 | {coveff} = 1 + {theta1} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
86 | {coveff} = 1 + {theta2} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
86 | {coveff} = 1 + {theta2} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
86 | {coveff} = 1 + {theta2} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
86 | {coveff} = 1 + {theta2} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
101 | {coveff} = exp({theta} * ({cov} - {median}))
| ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
101 | {coveff} = exp({theta} * ({cov} - {median}))
| ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
101 | {coveff} = exp({theta} * ({cov} - {median}))
| ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
101 | {coveff} = exp({theta} * ({cov} - {median}))
| ^
checkRd: (-1) add_covariate_effect.Rd:114: Lost braces
114 | min(frac{log(0.01)}{{min} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:114: Lost braces
114 | min(frac{log(0.01)}{{min} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:114: Lost braces; missing escapes or markup?
114 | min(frac{log(0.01)}{{min} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:115: Lost braces
115 | frac{log(100)}{{max} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:115: Lost braces
115 | frac{log(100)}{{max} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:115: Lost braces; missing escapes or markup?
115 | frac{log(100)}{{max} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:124: Lost braces
124 | max(frac{log(0.01)}{{max} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:124: Lost braces
124 | max(frac{log(0.01)}{{max} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:124: Lost braces; missing escapes or markup?
124 | max(frac{log(0.01)}{{max} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:125: Lost braces
125 | frac{log(100)}{{min} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:125: Lost braces
125 | frac{log(100)}{{min} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:125: Lost braces; missing escapes or markup?
125 | frac{log(100)}{{min} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces; missing escapes or markup?
133 | {coveff} = (frac{{cov}}{{median}})^{theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces
133 | {coveff} = (frac{{cov}}{{median}})^{theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces
133 | {coveff} = (frac{{cov}}{{median}})^{theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces; missing escapes or markup?
133 | {coveff} = (frac{{cov}}{{median}})^{theta}
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [1s/1s] OK
Running ‘testthat.R’ [1s/1s]
- checking PDF version of manual ... [9s/9s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '