- using R version 4.4.0 alpha (2024-03-31 r86238)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.4
- using session charset: UTF-8
- checking for file ‘gstat/DESCRIPTION’ ... OK
- this is package ‘gstat’ version ‘2.1-1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘gstat’ can be installed ... [9s/10s] OK
See the install log for details.
- used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
- used SDK: ‘MacOSX11.3.sdk’
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking whether startup messages can be suppressed ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [5s/5s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) jura.Rd:29: Lost braces; missing escapes or markup?
29 | \item{Cd}{ mg cadmium kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:30: Lost braces; missing escapes or markup?
30 | \item{Co}{ mg cobalt kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:31: Lost braces; missing escapes or markup?
31 | \item{Cr}{ mg chromium kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:32: Lost braces; missing escapes or markup?
32 | \item{Cu}{ mg copper kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:33: Lost braces; missing escapes or markup?
33 | \item{Ni}{ mg nickel kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:34: Lost braces; missing escapes or markup?
34 | \item{Pb}{ mg lead kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:35: Lost braces; missing escapes or markup?
35 | \item{Zn}{ mg zinc kg^{-1} topsoil }
| ^
checkRd: (-1) variogramST.Rd:49: Lost braces; missing escapes or markup?
49 | time lag $t$, the pseudo cross variogram $(Z_i(s)-Z_{i+t}(s+h))^2$ is averaged over all time
| ^
checkRd: (-1) variogramST.Rd:50: Lost braces; missing escapes or markup?
50 | lagged observation sets $Z_i$ and $Z_{i+t}$ available (weighted by the number of pairs involved).
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [5s/5s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [23s/24s] OK
Running ‘allier.R’ [1s/1s]
Comparing ‘allier.Rout’ to ‘allier.Rout.save’ ... OK
Running ‘blockkr.R’ [1s/1s]
Comparing ‘blockkr.Rout’ to ‘blockkr.Rout.save’ ... OK
Running ‘covtable.R’ [1s/1s]
Comparing ‘covtable.Rout’ to ‘covtable.Rout.save’ ... OK
Running ‘cv.R’ [1s/1s]
Comparing ‘cv.Rout’ to ‘cv.Rout.save’ ... OK
Running ‘cv3d.R’ [1s/1s]
Comparing ‘cv3d.Rout’ to ‘cv3d.Rout.save’ ... OK
Running ‘fit.R’ [1s/1s]
Comparing ‘fit.Rout’ to ‘fit.Rout.save’ ... OK
Running ‘krige0.R’ [2s/2s]
Comparing ‘krige0.Rout’ to ‘krige0.Rout.save’ ... OK
Running ‘line.R’ [1s/1s]
Comparing ‘line.Rout’ to ‘line.Rout.save’ ... OK
Running ‘merge.R’ [1s/1s]
Comparing ‘merge.Rout’ to ‘merge.Rout.save’ ... OK
Running ‘na.action.R’ [1s/1s]
Comparing ‘na.action.Rout’ to ‘na.action.Rout.save’ ... OK
Running ‘rings.R’ [1s/1s]
Comparing ‘rings.Rout’ to ‘rings.Rout.save’ ... OK
Running ‘sim.R’ [1s/1s]
Comparing ‘sim.Rout’ to ‘sim.Rout.save’ ... OK
Running ‘stars.R’ [5s/5s]
Comparing ‘stars.Rout’ to ‘stars.Rout.save’ ...16c16
< > crs = CRS("EPSG:28992")
---
> > crs = CRS("+init=epsg:28992")
66c66
< > crs = CRS("EPSG:28992")
---
> > crs = CRS("+init=epsg:28992")
107a108,110
> [4] "Attributes: < Component \"proj4string\": Attributes: < Names: 1 string mismatch > >"
> [5] "Attributes: < Component \"proj4string\": Attributes: < Length mismatch: comparison on first 2 components > >"
> [6] "Attributes: < Component \"proj4string\": Attributes: < Component 2: 1 string mismatch > >"
112a116,118
> Warning message:
> In CPL_crs_from_input(x) :
> GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order.
115c121
< User input: Amersfoort / RD New
---
> User input: +init=epsg:28992
142c148,149
< ID["EPSG",8807]]],
---
> ID["EPSG",8807]],
> ID["EPSG",19914]],
144c151
< AXIS["easting (X)",east,
---
> AXIS["(E)",east,
146,147c153,155
< LENGTHUNIT["metre",1]],
< AXIS["northing (Y)",north,
---
> LENGTHUNIT["metre",1,
> ID["EPSG",9001]]],
> AXIS["(N)",north,
149c157,158
< LENGTHUNIT["metre",1]],
---
> LENGTHUNIT["metre",1,
> ID["EPSG",9001]]],
151c160
< SCOPE["Engineering survey, topographic mapping."],
---
> SCOPE["unknown"],
153,154c162
< BBOX[50.75,3.2,53.7,7.22]],
< ID["EPSG",28992]]
---
> BBOX[50.75,3.2,53.7,7.22]]]
169a178,180
> [8] "Attributes: < Component 5: Attributes: < Names: 1 string mismatch > >"
> [9] "Attributes: < Component 5: Attributes: < Length mismatch: comparison on first 2 components > >"
> [10] "Attributes: < Component 5: Attributes: < Component 2: 1 string mismatch > >"
247c258
< time 1 4 2019-02-26 04:37:25 NZDT 1 secs POSIXct
---
> time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct
251,314c262,325
< 1 10.25 -0.35 2019-02-26 04:37:25 1
< 2 10.75 -0.35 2019-02-26 04:37:25 2
< 3 11.25 -0.35 2019-02-26 04:37:25 3
< 4 11.75 -0.35 2019-02-26 04:37:25 4
< 5 10.25 -1.05 2019-02-26 04:37:25 5
< 6 10.75 -1.05 2019-02-26 04:37:25 6
< 7 11.25 -1.05 2019-02-26 04:37:25 7
< 8 11.75 -1.05 2019-02-26 04:37:25 8
< 9 10.25 -1.75 2019-02-26 04:37:25 9
< 10 10.75 -1.75 2019-02-26 04:37:25 10
< 11 11.25 -1.75 2019-02-26 04:37:25 11
< 12 11.75 -1.75 2019-02-26 04:37:25 12
< 13 10.25 -2.45 2019-02-26 04:37:25 13
< 14 10.75 -2.45 2019-02-26 04:37:25 14
< 15 11.25 -2.45 2019-02-26 04:37:25 15
< 16 11.75 -2.45 2019-02-26 04:37:25 16
< 17 10.25 -0.35 2019-02-26 04:37:26 17
< 18 10.75 -0.35 2019-02-26 04:37:26 18
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< 22 10.75 -1.05 2019-02-26 04:37:26 22
< 23 11.25 -1.05 2019-02-26 04:37:26 23
< 24 11.75 -1.05 2019-02-26 04:37:26 24
< 25 10.25 -1.75 2019-02-26 04:37:26 25
< 26 10.75 -1.75 2019-02-26 04:37:26 26
< 27 11.25 -1.75 2019-02-26 04:37:26 27
< 28 11.75 -1.75 2019-02-26 04:37:26 28
< 29 10.25 -2.45 2019-02-26 04:37:26 29
< 30 10.75 -2.45 2019-02-26 04:37:26 30
< 31 11.25 -2.45 2019-02-26 04:37:26 31
< 32 11.75 -2.45 2019-02-26 04:37:26 32
< 33 10.25 -0.35 2019-02-26 04:37:27 33
< 34 10.75 -0.35 2019-02-26 04:37:27 34
< 35 11.25 -0.35 2019-02-26 04:37:27 35
< 36 11.75 -0.35 2019-02-26 04:37:27 36
< 37 10.25 -1.05 2019-02-26 04:37:27 37
< 38 10.75 -1.05 2019-02-26 04:37:27 38
< 39 11.25 -1.05 2019-02-26 04:37:27 39
< 40 11.75 -1.05 2019-02-26 04:37:27 40
< 41 10.25 -1.75 2019-02-26 04:37:27 41
< 42 10.75 -1.75 2019-02-26 04:37:27 42
< 43 11.25 -1.75 2019-02-26 04:37:27 43
< 44 11.75 -1.75 2019-02-26 04:37:27 44
< 45 10.25 -2.45 2019-02-26 04:37:27 45
< 46 10.75 -2.45 2019-02-26 04:37:27 46
< 47 11.25 -2.45 2019-02-26 04:37:27 47
< 48 11.75 -2.45 2019-02-26 04:37:27 48
< 49 10.25 -0.35 2019-02-26 04:37:28 49
< 50 10.75 -0.35 2019-02-26 04:37:28 50
< 51 11.25 -0.35 2019-02-26 04:37:28 51
< 52 11.75 -0.35 2019-02-26 04:37:28 52
< 53 10.25 -1.05 2019-02-26 04:37:28 53
< 54 10.75 -1.05 2019-02-26 04:37:28 54
< 55 11.25 -1.05 2019-02-26 04:37:28 55
< 56 11.75 -1.05 2019-02-26 04:37:28 56
< 57 10.25 -1.75 2019-02-26 04:37:28 57
< 58 10.75 -1.75 2019-02-26 04:37:28 58
< 59 11.25 -1.75 2019-02-26 04:37:28 59
< 60 11.75 -1.75 2019-02-26 04:37:28 60
< 61 10.25 -2.45 2019-02-26 04:37:28 61
< 62 10.75 -2.45 2019-02-26 04:37:28 62
< 63 11.25 -2.45 2019-02-26 04:37:28 63
< 64 11.75 -2.45 2019-02-26 04:37:28 64
---
> 1 10.25 -0.35 2019-02-25 15:37:25 1
> 2 10.75 -0.35 2019-02-25 15:37:25 2
> 3 11.25 -0.35 2019-02-25 15:37:25 3
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> 8 11.75 -1.05 2019-02-25 15:37:25 8
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> 10 10.75 -1.75 2019-02-25 15:37:25 10
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> 19 11.25 -0.35 2019-02-25 15:37:26 19
> 20 11.75 -0.35 2019-02-25 15:37:26 20
> 21 10.25 -1.05 2019-02-25 15:37:26 21
> 22 10.75 -1.05 2019-02-25 15:37:26 22
> 23 11.25 -1.05 2019-02-25 15:37:26 23
> 24 11.75 -1.05 2019-02-25 15:37:26 24
> 25 10.25 -1.75 2019-02-25 15:37:26 25
> 26 10.75 -1.75 2019-02-25 15:37:26 26
> 27 11.25 -1.75 2019-02-25 15:37:26 27
> 28 11.75 -1.75 2019-02-25 15:37:26 28
> 29 10.25 -2.45 2019-02-25 15:37:26 29
> 30 10.75 -2.45 2019-02-25 15:37:26 30
> 31 11.25 -2.45 2019-02-25 15:37:26 31
> 32 11.75 -2.45 2019-02-25 15:37:26 32
> 33 10.25 -0.35 2019-02-25 15:37:27 33
> 34 10.75 -0.35 2019-02-25 15:37:27 34
> 35 11.25 -0.35 2019-02-25 15:37:27 35
> 36 11.75 -0.35 2019-02-25 15:37:27 36
> 37 10.25 -1.05 2019-02-25 15:37:27 37
> 38 10.75 -1.05 2019-02-25 15:37:27 38
> 39 11.25 -1.05 2019-02-25 15:37:27 39
> 40 11.75 -1.05 2019-02-25 15:37:27 40
> 41 10.25 -1.75 2019-02-25 15:37:27 41
> 42 10.75 -1.75 2019-02-25 15:37:27 42
> 43 11.25 -1.75 2019-02-25 15:37:27 43
> 44 11.75 -1.75 2019-02-25 15:37:27 44
> 45 10.25 -2.45 2019-02-25 15:37:27 45
> 46 10.75 -2.45 2019-02-25 15:37:27 46
> 47 11.25 -2.45 2019-02-25 15:37:27 47
> 48 11.75 -2.45 2019-02-25 15:37:27 48
> 49 10.25 -0.35 2019-02-25 15:37:28 49
> 50 10.75 -0.35 2019-02-25 15:37:28 50
> 51 11.25 -0.35 2019-02-25 15:37:28 51
> 52 11.75 -0.35 2019-02-25 15:37:28 52
> 53 10.25 -1.05 2019-02-25 15:37:28 53
> 54 10.75 -1.05 2019-02-25 15:37:28 54
> 55 11.25 -1.05 2019-02-25 15:37:28 55
> 56 11.75 -1.05 2019-02-25 15:37:28 56
> 57 10.25 -1.75 2019-02-25 15:37:28 57
> 58 10.75 -1.75 2019-02-25 15:37:28 58
> 59 11.25 -1.75 2019-02-25 15:37:28 59
> 60 11.75 -1.75 2019-02-25 15:37:28 60
> 61 10.25 -2.45 2019-02-25 15:37:28 61
> 62 10.75 -2.45 2019-02-25 15:37:28 62
> 63 11.25 -2.45 2019-02-25 15:37:28 63
> 64 11.75 -2.45 2019-02-25 15:37:28 64
413,416c424,427
< 2019-02-26 04:37:25 1
< 2019-02-26 04:37:26 2
< 2019-02-26 04:37:27 3
< 2019-02-26 04:37:28 4
---
> 2019-02-25 15:37:25 1
> 2019-02-25 15:37:26 2
> 2019-02-25 15:37:27 3
> 2019-02-25 15:37:28 4
419,420c430,431
< [1] "2019-02-26 04:37:26 NZDT" "2019-02-26 04:37:27 NZDT"
< [3] "2019-02-26 04:37:28 NZDT" "2019-02-26 04:37:29 NZDT"
---
> [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC"
> [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC"
432,433c443,444
< y 1 4 -1.11e-16 -0.7 NA [y]
< time 1 4 2019-02-26 04:37:25 NZDT 1 secs POSIXct
---
> y 1 4 -1.11022e-16 -0.7 NA [y]
> time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct
Running ‘unproj.R’ [2s/2s]
Comparing ‘unproj.Rout’ to ‘unproj.Rout.save’ ...60c60
< Spam version 2.10-0 (2023-10-23) is loaded.
---
> Spam version 2.9-1 (2022-08-07) is loaded.
74c74
< Linking to GEOS 3.11.0, GDAL 3.5.3, PROJ 9.1.0; sf_use_s2() is TRUE
---
> Linking to GEOS 3.11.1, GDAL 3.6.2, PROJ 9.1.1; sf_use_s2() is TRUE
Running ‘variogram.R’ [1s/1s]
Comparing ‘variogram.Rout’ to ‘variogram.Rout.save’ ... OK
Running ‘vdist.R’ [1s/1s]
Comparing ‘vdist.Rout’ to ‘vdist.Rout.save’ ...23c23
< 1500 (180260, 331300) 5.647694 1.100095
---
> 1500 (180260, 331300) 5.50671 1.100095
Running ‘windst.R’ [3s/3s]
Comparing ‘windst.Rout’ to ‘windst.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [27s/29s] OK
- checking PDF version of manual ... [7s/7s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '