- using R version 4.4.0 RC (2024-04-16 r86473)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.2.0-13) 13.2.0
GNU Fortran (Debian 13.2.0-13) 13.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘fPASS/DESCRIPTION’ ... OK
- this is package ‘fPASS’ version ‘1.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘fPASS’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s/6s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the package can be unloaded cleanly ... [3s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
- checking loading without being on the library search path ... [4s/5s] OK
- checking whether startup messages can be suppressed ... [4s/5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [21s/26s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [24s/28s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
PASS_Proj_Test_ufDA 8.709 0.128 10.381
Extract_Eigencomp_fDA 7.301 0.483 8.907
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [87s/100s] ERROR
Running ‘testthat.R’ [87s/99s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(fPASS)
Power and Sample Size for Projection Test under Repeated
Measures : Version 1.0.0
>
> test_check("fPASS")
NULL values are specified for the arguments:
Eigen function has been provided
Estimation of eigenfunction starts
Number of observations per subject varies,
internally setting missing_type must be `nomiss` and
missing percent to zero
number of measurements will be taken randomly between 4 and 7
Eigenfunction is estimated based on a sample of size = 5000
NULL values are specified for the arguments:
Eigen function has been provided
Estimation of eigenfunction starts
Eigenfunction is estimated based on a sample of size = 5000
NULL values are specified for the arguments:
Eigen function has been provided
Estimation of eigenfunction starts
Number of observations per subject varies,
internally setting missing_type must be `nomiss` and
missing percent to zero
number of measurements will be taken randomly between 4 and 7
Eigenfunction is estimated based on a sample of size = 5000
Measurement error variance is estimated to be zero, setting to 1e-6
NULL values are specified for the arguments:
Eigen function has been provided
Estimation of eigenfunction starts
Eigenfunction is estimated based on a sample of size = 5000
User did not specify values to the following arguments: work.grid ---- default values are used
NULL values are specified for the arguments:
User did not specify values to the following arguments: work.grid ---- default values are used
NULL values are specified for the arguments:
Computing power of Projection-based test for total sample size = 100
NULL values are specified for the arguments:
Eigen function has been provided
Estimation of eigenfunction starts
Number of observations per subject varies,
internally setting missing_type must be `nomiss` and
missing percent to zero
number of measurements will be taken randomly between 4 and 7
Eigenfunction is estimated based on a sample of size = 5000
[1] 0.0501
User did not specify values to the following arguments: nsim ---- default values are used
User did not specify values to the following arguments: nsim ---- default values are used
User did not specify values to the following arguments: nsim ---- default values are used
User did not specify values to the following arguments: nsim ---- default values are used
User did not specify values to the following arguments: nsim ---- default values are used
User did not specify values to the following arguments: nsim ---- default values are used
User did not specify values to the following arguments: nsim ---- default values are used
User did not specify values to the following arguments: nsim ---- default values are used
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 550 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-Power_Hotelling_T.R:83:23'): pHotellingT() provides the correct power
when H0 is true
and the covariance are unequal ──
`obs.error` is not less than `exp.err`. Difference: 0.0005
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 550 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [437s/521s] OK
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [2s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR