- using R version 4.4.0 RC (2024-04-16 r86473)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.2.0-13) 13.2.0
GNU Fortran (Debian 13.2.0-13) 13.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘chevron/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘chevron’ version ‘0.2.5’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘chevron’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [5s/7s] OK
- checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
- checking whether the package can be unloaded cleanly ... [4s/5s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [5s/6s] OK
- checking loading without being on the library search path ... [5s/6s] OK
- checking whether startup messages can be suppressed ... [5s/6s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [33s/41s] OK
- checking Rd files ... [2s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [113s/133s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
egt01 5.792 0.035 6.868
egt05_qtcat 5.758 0.062 7.419
aet03 5.417 0.107 6.762
lbt06 5.257 0.023 6.520
lbt01 4.919 0.031 5.711
fstg01 4.776 0.039 5.955
ext01 4.710 0.008 5.403
lbt14 4.599 0.000 5.722
run 4.098 0.032 5.275
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [10m/12m] ERROR
Running ‘testthat.R’ [10m/12m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(checkmate)
> library(chevron)
>
> test_check("chevron")
[ FAIL 17 | WARN 33 | SKIP 167 | PASS 283 ]
══ Skipped tests (167) ═════════════════════════════════════════════════════════
• !interactive() is TRUE (1): 'test-chevron_tlg-methods.R:182:3'
• On CRAN (166): 'test-ael01_nollt.R:7:3', 'test-ael01_nollt.R:20:3',
'test-ael01_nollt.R:33:3', 'test-ael01_nollt.R:48:3', 'test-aet01.R:12:3',
'test-aet01.R:29:3', 'test-aet01.R:35:3', 'test-aet01.R:65:3',
'test-aet01_aesi.R:17:3', 'test-aet01_aesi.R:30:3', 'test-aet01_aesi.R:36:3',
'test-aet02.R:30:3', 'test-aet03.R:10:3', 'test-aet03.R:27:3',
'test-aet04.R:10:3', 'test-aet04.R:32:3', 'test-aet05.R:7:3',
'test-aet05.R:24:3', 'test-aet05_all.R:7:3', 'test-aet05_all.R:21:3',
'test-aet10.R:10:3', 'test-aet10.R:24:3', 'test-cfbt01.R:7:3',
'test-cfbt01.R:22:3', 'test-chevron_tlg-methods.R:5:3',
'test-chevron_tlg-methods.R:13:3', 'test-chevron_tlg-methods.R:18:3',
'test-chevron_tlg-methods.R:25:3', 'test-chevron_tlg-methods.R:42:3',
'test-chevron_tlg-methods.R:48:3', 'test-chevron_tlg-methods.R:67:3',
'test-chevron_tlg-methods.R:203:3', 'test-chevron_tlg-methods.R:216:3',
'test-chevron_tlg-methods.R:220:3', 'test-cmt01a.R:7:3',
'test-cmt01a.R:19:3', 'test-cmt01a.R:33:3', 'test-cmt01a.R:41:3',
'test-cmt02_pt.R:9:3', 'test-cmt02_pt.R:17:3', 'test-coxt01.R:6:3',
'test-coxt02.R:5:3', 'test-default_tlg.R:5:3', 'test-default_tlg.R:12:3',
'test-default_tlg.R:19:3', 'test-default_tlg.R:26:3',
'test-default_tlg.R:33:3', 'test-default_tlg.R:40:3',
'test-default_tlg.R:47:3', 'test-default_tlg.R:54:3',
'test-default_tlg.R:61:3', 'test-default_tlg.R:68:3',
'test-default_tlg.R:78:3', 'test-default_tlg.R:86:3',
'test-default_tlg.R:93:3', 'test-default_tlg.R:100:3',
'test-default_tlg.R:107:3', 'test-dmt01.R:8:3', 'test-dmt01.R:15:3',
'test-dmt01.R:20:3', 'test-dmt01.R:25:3', 'test-dmt01.R:30:3',
'test-dmt01.R:37:3', 'test-dmt01.R:50:3', 'test-dmt01.R:63:3',
'test-dmt01.R:74:3', 'test-dst01.R:11:3', 'test-dst01.R:22:3',
'test-dst01.R:29:3', 'test-dst01.R:39:3', 'test-dst01.R:44:3',
'test-dst01.R:49:3', 'test-dst01.R:56:3', 'test-dtht01.R:12:3',
'test-dtht01.R:19:3', 'test-dtht01.R:30:3', 'test-egt01.R:7:3',
'test-egt01.R:20:3', 'test-egt02.R:7:3', 'test-egt02.R:14:3',
'test-egt03.R:7:3', 'test-egt03.R:28:3', 'test-egt05_qtcat.R:7:3',
'test-egt05_qtcat.R:28:3', 'test-ext01.R:7:3', 'test-ext01.R:15:3',
'test-ext01.R:23:3', 'test-ext01.R:36:3', 'test-ext01.R:47:3',
'test-ext01.R:57:3', 'test-ext01.R:68:3', 'test-lbt01.R:7:3',
'test-lbt01.R:16:3', 'test-lbt01.R:29:3', 'test-lbt04.R:7:3',
'test-lbt04.R:20:3', 'test-lbt04.R:31:3', 'test-lbt04.R:39:3',
'test-lbt05.R:7:3', 'test-lbt05.R:36:3', 'test-lbt06.R:20:3',
'test-lbt07.R:7:3', 'test-lbt07.R:22:3', 'test-lbt14.R:7:3',
'test-lbt14.R:14:3', 'test-lbt14.R:21:3', 'test-lbt14.R:28:3',
'test-lbt14.R:41:3', 'test-lbt14.R:60:3', 'test-lbt14.R:67:3',
'test-lbt14.R:92:3', 'test-lbt14.R:111:3', 'test-lbt14.R:119:3',
'test-lbt15.R:7:3', 'test-lbt15.R:20:3', 'test-lbt15.R:31:3',
'test-lbt15.R:42:3', 'test-lbt15.R:50:3', 'test-lbt15.R:58:3',
'test-mht01.R:7:3', 'test-mht01.R:15:3', 'test-mht01.R:21:3',
'test-mng01.R:7:3', 'test-mng01.R:25:3', 'test-mng01.R:52:3',
'test-mng01.R:63:3', 'test-mng01.R:75:3', 'test-mng01.R:89:3',
'test-mng01.R:101:3', 'test-pdt01.R:7:3', 'test-pdt01.R:21:3',
'test-pdt01.R:36:3', 'test-pdt02.R:7:3', 'test-pdt02.R:21:3',
'test-pdt02.R:36:3', 'test-rmpt01.R:7:3', 'test-rmpt01.R:17:3',
'test-rmpt01.R:31:3', 'test-rmpt03.R:10:3', 'test-rmpt03.R:22:3',
'test-rmpt03.R:38:3', 'test-rmpt04.R:7:3', 'test-rmpt04.R:17:3',
'test-rmpt04.R:34:3', 'test-rmpt05.R:7:3', 'test-rmpt05.R:17:3',
'test-rmpt05.R:34:3', 'test-rmpt06.R:8:3', 'test-rmpt06.R:16:3',
'test-rmpt06.R:29:3', 'test-rspt01.R:5:3', 'test-rspt01.R:17:3',
'test-rspt01.R:36:3', 'test-rspt01.R:55:3', 'test-rspt01.R:74:3',
'test-rspt01.R:97:3', 'test-rspt01.R:123:3', 'test-ttet01.R:10:3',
'test-ttet01.R:22:3', 'test-ttet01.R:44:3', 'test-ttet01.R:66:3',
'test-utils.R:88:1', 'test-vst01.R:7:3', 'test-vst01.R:14:3',
'test-vst02.R:7:3', 'test-vst02.R:14:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-fstg01.R:7:3'): fstg01 works as expected ─────────────────────
grid::is.grob(raw_res) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-fstg01.R:16:3'): fstg01 works as expected with custom color set ──
grid::is.grob(res1) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-fstg01.R:19:3'): fstg01 works as expected with custom color set ──
grid::is.grob(res2) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-fstg01.R:26:3'): fstg01 works if changes are in subgroups, conf_level, and label_all ──
grid::is.grob(res1) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-fstg01.R:32:3'): fstg01 works if changes are in subgroups, conf_level, and label_all ──
grid::is.grob(res2) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-fstg01.R:42:3'): fstg01 can handle some NA values in subgroups ──
grid::is.grob(res) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Error ('test-fstg02.R:7:3'): fstg02 works as expected ───────────────────────
Error in `eval(code, test_env)`: Assertion on 'grid::is.grob(raw_res)' failed: Must be TRUE.
Backtrace:
▆
1. └─checkmate::assert_true(grid::is.grob(raw_res)) at test-fstg02.R:7:3
2. └─checkmate::makeAssertion(x, res, .var.name, add)
3. └─checkmate:::mstop(...)
── Error ('test-fstg02.R:16:3'): fstg02 works as expected with custom color set ──
Error in `eval(code, test_env)`: Assertion on 'grid::is.grob(res1)' failed: Must be TRUE.
Backtrace:
▆
1. └─checkmate::assert_true(grid::is.grob(res1)) at test-fstg02.R:16:3
2. └─checkmate::makeAssertion(x, res, .var.name, add)
3. └─checkmate:::mstop(...)
── Error ('test-fstg02.R:26:3'): fstg02 works if changes are in subgroups, strata_var, conf_level, and label_all ──
Error in `eval(code, test_env)`: Assertion on 'grid::is.grob(res1)' failed: Must be TRUE.
Backtrace:
▆
1. └─checkmate::assert_true(grid::is.grob(res1)) at test-fstg02.R:26:3
2. └─checkmate::makeAssertion(x, res, .var.name, add)
3. └─checkmate:::mstop(...)
── Error ('test-fstg02.R:42:3'): fstg02 can handle some NA values in subgroups ──
Error in `eval(code, test_env)`: Assertion on 'grid::is.grob(res)' failed: Must be TRUE.
Backtrace:
▆
1. └─checkmate::assert_true(grid::is.grob(res)) at test-fstg02.R:42:3
2. └─checkmate::makeAssertion(x, res, .var.name, add)
3. └─checkmate:::mstop(...)
── Error ('test-fstg02.R:56:3'): fstg02 can handle customized time units ───────
Error in `eval(code, test_env)`: Assertion on 'grid::is.grob(res1)' failed: Must be TRUE.
Backtrace:
▆
1. └─checkmate::assert_true(grid::is.grob(res1)) at test-fstg02.R:56:3
2. └─checkmate::makeAssertion(x, res, .var.name, add)
3. └─checkmate:::mstop(...)
── Failure ('test-kmg01.R:7:3'): kmg01 works as expected ───────────────────────
grid::is.grob(raw_res) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-kmg01.R:21:3'): kmg01 works as expected with custom color set ──
grid::is.grob(res) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-kmg01.R:23:3'): kmg01 works as expected with custom color set ──
grid::is.grob(res) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-kmg01.R:34:3'): kmg01 works if change pvalue, ties and conf level ──
grid::is.grob(res) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-kmg01.R:44:3'): kmg01 works if change annotation position ────
grid::is.grob(res) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-kmg01.R:55:3'): kmg01 works for stratified anlaysis ──────────
grid::is.grob(res) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 17 | WARN 33 | SKIP 167 | PASS 283 ]
Deleting unused snapshots:
• mng01/run-mng01-with-custom-unnamed-color-set.svg
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [236s/288s] OK
- checking PDF version of manual ... [13s/16s] OK
- checking HTML version of manual ... [8s/13s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR