- using R version 4.4.0 beta (2024-04-09 r86391)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.2.0-13) 13.2.0
GNU Fortran (Debian 13.2.0-13) 13.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘UNCLES/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘UNCLES’ version ‘2.0’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘UNCLES’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s/15s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... NOTE
Argument items with no description in Rd file 'HC.Rd':
‘X’ ‘K’
Argument items with no description in Rd file 'KA.Rd':
‘X’ ‘K’ ‘distancemetric’
Argument items with no description in Rd file 'SOMs.Rd':
‘X’ ‘K’ ‘topo’ ‘rlen’ ‘alpha’ ‘n.hood’
Argument items with no description in Rd file 'binarise.Rd':
‘U’ ‘K’ ‘technique’ ‘parameter’
Argument items with no description in Rd file 'closestToSquareFactors.Rd':
‘n’
Argument items with no description in Rd file 'clustDist.Rd':
‘U1’ ‘U2’ ‘X’ ‘criterion’
Argument items with no description in Rd file 'clustVec2partMat.Rd':
‘C’
Argument items with no description in Rd file 'clusterDataset.Rd':
‘X’ ‘K’ ‘D’ ‘methods’
Argument items with no description in Rd file 'factors.Rd':
‘n’ ‘primeonly’
Argument items with no description in Rd file 'fixnans.Rd':
‘X’ ‘type’
Argument items with no description in Rd file 'fuzzystretch.Rd':
‘X’ ‘x0’
Argument items with no description in Rd file 'generateCoPaM.Rd':
‘U’ ‘relabel_technique’ ‘w’ ‘X’ ‘distCriterion’ ‘K’ ‘GDM’
Argument items with no description in Rd file 'isValidBPM.Rd':
‘U’
Argument items with no description in Rd file 'isempty.Rd':
‘X’
Argument items with no description in Rd file 'isnullorempty.Rd':
‘X’
Argument items with no description in Rd file 'kmeansKA.Rd':
‘X’ ‘K’ ‘distancemetric’ ‘iter.max’ ‘nstart’ ‘algorithm’ ‘trace’
Argument items with no description in Rd file 'mnplots.Rd':
‘Vmse’ ‘mseCache’ ‘subplotdim’ ‘subplotind’ ‘minimiseDistance’
Argument items with no description in Rd file 'mseclusters.Rd':
‘X’ ‘B’ ‘normalise’
Argument items with no description in Rd file 'normaliseMatrix.Rd':
‘X’ ‘type’
Argument items with no description in Rd file 'partMat2clustVec.rd':
‘U’ ‘skipValidity’
Argument items with no description in Rd file 'permutations.Rd':
‘n’
Argument items with no description in Rd file 'relabelClusts.Rd':
‘ref’ ‘input’ ‘technique’ ‘X’ ‘distCriterion’
- checking for unstated dependencies in examples ... OK
- checking examples ... [1s/1s] OK
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE