- using R version 4.2.0 (2022-04-22)
- using platform: x86_64-apple-darwin17.0 (64-bit)
- using session charset: UTF-8
- checking for file ‘iDynoR/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘iDynoR’ version ‘1.0’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘iDynoR’ can be installed ... [5s/5s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
‘XML’ ‘vegan’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/3s] NOTE
agent_returnGridResolution: no visible global function definition for
‘xmlAttrs’
agent_returnIVoxels: no visible global function definition for
‘xmlAttrs’
agent_returnJVoxels: no visible global function definition for
‘xmlAttrs’
agent_returnKVoxels: no visible global function definition for
‘xmlAttrs’
agent_returnSimIteration: no visible global function definition for
‘xmlAttrs’
agent_returnSimTime: no visible global function definition for
‘xmlAttrs’
agent_returnSpeciesResultData: no visible global function definition
for ‘xmlSize’
agent_returnSpeciesResultData: no visible global function definition
for ‘xmlAttrs’
agent_returnSpeciesResultData: no visible global function definition
for ‘read.csv’
env_returnConcentrationAndRateChange: no visible global function
definition for ‘xmlSize’
env_returnConcentrationAndRateChange: no visible global function
definition for ‘xmlName’
env_returnConcentrationAndRateChange: no visible global function
definition for ‘xmlAttrs’
env_returnGlobalProductionRates: no visible global function definition
for ‘xmlSize’
env_returnGlobalProductionRates: no visible global function definition
for ‘xmlAttrs’
env_returnSimIteration: no visible global function definition for
‘xmlAttrs’
env_returnSimTime: no visible global function definition for ‘xmlAttrs’
env_returnSoluteGridIVoxels: no visible global function definition for
‘xmlAttrs’
env_returnSoluteGridJVoxels: no visible global function definition for
‘xmlAttrs’
env_returnSoluteGridKVoxels: no visible global function definition for
‘xmlAttrs’
env_returnSoluteGridRes: no visible global function definition for
‘xmlAttrs’
env_returnSpecifiedSoluteData: no visible global function definition
for ‘xmlSize’
env_soluteProductionRateOverTime: no visible global function definition
for ‘xmlValue’
plotAgents: no visible global function definition for ‘pdf’
plotAgents: no visible global function definition for ‘points’
plotAgents: no visible global function definition for ‘legend’
plotAgents: no visible global function definition for ‘dev.off’
plotContour: no visible global function definition for ‘pdf’
plotContour: no visible global function definition for ‘filled.contour’
plotContour: no visible global function definition for ‘dev.off’
plotTimeCourseAbund: no visible global function definition for ‘pdf’
plotTimeCourseAbund: no visible global function definition for
‘dev.off’
plotTimeCourseAgents: no visible global function definition for ‘pdf’
plotTimeCourseAgents: no visible global function definition for ‘lines’
plotTimeCourseAgents: no visible global function definition for
‘legend’
plotTimeCourseAgents: no visible global function definition for
‘dev.off’
readSimResultFile: no visible global function definition for
‘xmlTreeParse’
readSimResultFile: no visible global function definition for ‘xmlRoot’
simpsonIndex: no visible global function definition for ‘pdf’
simpsonIndex: no visible global function definition for ‘diversity’
simpsonIndex: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
dev.off diversity filled.contour legend lines pdf points read.csv
xmlAttrs xmlName xmlRoot xmlSize xmlTreeParse xmlValue
Consider adding
importFrom("grDevices", "dev.off", "pdf")
importFrom("graphics", "filled.contour", "legend", "lines", "points")
importFrom("utils", "read.csv")
to your NAMESPACE file.
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [1s/1s] OK
- checking PDF version of manual ... OK
- DONE
Status: 2 NOTEs
- using check arguments '--no-clean-on-error '