- using R Under development (unstable) (2024-03-24 r86185 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'gstat/DESCRIPTION' ... OK
- this is package 'gstat' version '2.1-1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'gstat' can be installed ... OK
See the install log for details.
- used C compiler: 'gcc.exe (GCC) 13.2.0'
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] OK
- checking whether the package can be unloaded cleanly ... [1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [1s] OK
- checking whether startup messages can be suppressed ... [1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s] OK
- checking Rd files ... [1s] NOTE
checkRd: (-1) jura.Rd:29: Lost braces; missing escapes or markup?
29 | \item{Cd}{ mg cadmium kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:30: Lost braces; missing escapes or markup?
30 | \item{Co}{ mg cobalt kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:31: Lost braces; missing escapes or markup?
31 | \item{Cr}{ mg chromium kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:32: Lost braces; missing escapes or markup?
32 | \item{Cu}{ mg copper kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:33: Lost braces; missing escapes or markup?
33 | \item{Ni}{ mg nickel kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:34: Lost braces; missing escapes or markup?
34 | \item{Pb}{ mg lead kg^{-1} topsoil }
| ^
checkRd: (-1) jura.Rd:35: Lost braces; missing escapes or markup?
35 | \item{Zn}{ mg zinc kg^{-1} topsoil }
| ^
checkRd: (-1) variogramST.Rd:49: Lost braces; missing escapes or markup?
49 | time lag $t$, the pseudo cross variogram $(Z_i(s)-Z_{i+t}(s+h))^2$ is averaged over all time
| ^
checkRd: (-1) variogramST.Rd:50: Lost braces; missing escapes or markup?
50 | lagged observation sets $Z_i$ and $Z_{i+t}$ available (weighted by the number of pairs involved).
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [1s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking sizes of PDF files under 'inst/doc' ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [19s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [50s] OK
Running 'allier.R' [2s]
Comparing 'allier.Rout' to 'allier.Rout.save' ... OK
Running 'blockkr.R' [2s]
Comparing 'blockkr.Rout' to 'blockkr.Rout.save' ... OK
Running 'covtable.R' [2s]
Comparing 'covtable.Rout' to 'covtable.Rout.save' ... OK
Running 'cv.R' [2s]
Comparing 'cv.Rout' to 'cv.Rout.save' ... OK
Running 'cv3d.R' [2s]
Comparing 'cv3d.Rout' to 'cv3d.Rout.save' ... OK
Running 'fit.R' [2s]
Comparing 'fit.Rout' to 'fit.Rout.save' ... OK
Running 'krige0.R' [3s]
Comparing 'krige0.Rout' to 'krige0.Rout.save' ... OK
Running 'line.R' [2s]
Comparing 'line.Rout' to 'line.Rout.save' ... OK
Running 'merge.R' [2s]
Comparing 'merge.Rout' to 'merge.Rout.save' ... OK
Running 'na.action.R' [2s]
Comparing 'na.action.Rout' to 'na.action.Rout.save' ... OK
Running 'rings.R' [2s]
Comparing 'rings.Rout' to 'rings.Rout.save' ... OK
Running 'sim.R' [2s]
Comparing 'sim.Rout' to 'sim.Rout.save' ... OK
Running 'stars.R' [11s]
Comparing 'stars.Rout' to 'stars.Rout.save' ...16c16
< > crs = CRS("EPSG:28992")
---
> > crs = CRS("+init=epsg:28992")
66c66
< > crs = CRS("EPSG:28992")
---
> > crs = CRS("+init=epsg:28992")
107a108,110
> [4] "Attributes: < Component \"proj4string\": Attributes: < Names: 1 string mismatch > >"
> [5] "Attributes: < Component \"proj4string\": Attributes: < Length mismatch: comparison on first 2 components > >"
> [6] "Attributes: < Component \"proj4string\": Attributes: < Component 2: 1 string mismatch > >"
112a116,118
> Warning message:
> In CPL_crs_from_input(x) :
> GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order.
115c121
< User input: Amersfoort / RD New
---
> User input: +init=epsg:28992
142c148,149
< ID["EPSG",8807]]],
---
> ID["EPSG",8807]],
> ID["EPSG",19914]],
144c151
< AXIS["easting (X)",east,
---
> AXIS["(E)",east,
146,147c153,155
< LENGTHUNIT["metre",1]],
< AXIS["northing (Y)",north,
---
> LENGTHUNIT["metre",1,
> ID["EPSG",9001]]],
> AXIS["(N)",north,
149c157,158
< LENGTHUNIT["metre",1]],
---
> LENGTHUNIT["metre",1,
> ID["EPSG",9001]]],
151c160
< SCOPE["Engineering survey, topographic mapping."],
---
> SCOPE["unknown"],
153,154c162
< BBOX[50.75,3.2,53.7,7.22]],
< ID["EPSG",28992]]
---
> BBOX[50.75,3.2,53.7,7.22]]]
169a178,180
> [8] "Attributes: < Component 5: Attributes: < Names: 1 string mismatch > >"
> [9] "Attributes: < Component 5: Attributes: < Length mismatch: comparison on first 2 components > >"
> [10] "Attributes: < Component 5: Attributes: < Component 2: 1 string mismatch > >"
247c258
< time 1 4 2019-02-25 15:37:25 CET 1 secs POSIXct
---
> time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct
419,420c430,431
< [1] "2019-02-25 15:37:26 CET" "2019-02-25 15:37:27 CET"
< [3] "2019-02-25 15:37:28 CET" "2019-02-25 15:37:29 CET"
---
> [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC"
> [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC"
432,433c443,444
< y 1 4 -1.11e-16 -0.7 NA [y]
< time 1 4 2019-02-25 15:37:25 CET 1 secs POSIXct
---
> y 1 4 -1.11022e-16 -0.7 NA [y]
> time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct
454,455c465,466
< zinc 101.7643 199.48523 300.2140 399.7954 544.0229 1817.2057 25045
< lead 32.7799 73.01782 107.9339 133.1702 178.8162 638.9396 25045
---
> zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045
> lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045
Running 'unproj.R' [3s]
Comparing 'unproj.Rout' to 'unproj.Rout.save' ...60c60
< Spam version 2.10-0 (2023-10-23) is loaded.
---
> Spam version 2.9-1 (2022-08-07) is loaded.
74c74
< Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE
---
> Linking to GEOS 3.11.1, GDAL 3.6.2, PROJ 9.1.1; sf_use_s2() is TRUE
Running 'variogram.R' [2s]
Comparing 'variogram.Rout' to 'variogram.Rout.save' ... OK
Running 'vdist.R' [2s]
Comparing 'vdist.Rout' to 'vdist.Rout.save' ...23c23
< 1500 (180260, 331300) 5.641176 1.100095
---
> 1500 (180260, 331300) 5.50671 1.100095
Running 'windst.R' [8s]
Comparing 'windst.Rout' to 'windst.Rout.save' ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [86s] OK
- checking PDF version of manual ... [30s] OK
- checking HTML version of manual ... [11s] OK
- DONE
Status: 1 NOTE