- using R Under development (unstable) (2024-03-15 r86142)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘Biocomb/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘Biocomb’ version ‘0.4’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘Biocomb’ can be installed ... [102s/115s] OK
See the install log for details.
- used C++ compiler: ‘g++-13 (GCC) 13.2.0’
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... [8s/10s] OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... [8s/11s] OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [44s/52s] OK
- checking Rd files ... NOTE
checkRd: (-1) CalcROC.Rd:47: Lost braces
47 | The accuracy of the classifier is the mean value of dQuote{(optSn, optSp)} for two-class problem and the mean value of \dQuote{(optSn, optSp,optS3)} for three-class problem.
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... NOTE
S3 methods shown with full name in Rd file 'select.cfs.Rd':
‘select.cfs’
S3 methods shown with full name in Rd file 'select.fast.filter.Rd':
‘select.fast.filter’
S3 methods shown with full name in Rd file 'select.forward.Corr.Rd':
‘select.forward.Corr’
S3 methods shown with full name in Rd file 'select.forward.wrapper.Rd':
‘select.forward.wrapper’
S3 methods shown with full name in Rd file 'select.inf.chi2.Rd':
‘select.inf.chi2’
S3 methods shown with full name in Rd file 'select.inf.gain.Rd':
‘select.inf.gain’
S3 methods shown with full name in Rd file 'select.inf.symm.Rd':
‘select.inf.symm’
S3 methods shown with full name in Rd file 'select.process.Rd':
‘select.process’
S3 methods shown with full name in Rd file 'select.relief.Rd':
‘select.relief’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [42s/57s] OK
- checking PDF version of manual ... [13s/18s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 2 NOTEs