- using R Under development (unstable) (2024-03-08 r86072)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 18.1.1
flang-new version 18.1.1
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘rbioapi/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘rbioapi’ version ‘0.8.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘rbioapi’ can be installed ... [11s/13s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [19s/25s] OK
- checking Rd files ... NOTE
checkRd: (-1) rba_jaspar_collections_matrices.Rd:63: Lost braces; missing escapes or markup?
63 | "GET "https://jaspar.genereg.net/api/v1/collections/{collection}/"
| ^
checkRd: (-1) rba_jaspar_matrix.Rd:38: Lost braces; missing escapes or markup?
38 | "GET "https://jaspar.genereg.net/api/v1/matrix/{matrix_id}/"
| ^
checkRd: (-1) rba_jaspar_matrix_versions.Rd:32: Lost braces; missing escapes or markup?
32 | "GET "https://jaspar.genereg.net/api/v1/matrix/{base_id}/versions/"
| ^
checkRd: (-1) rba_jaspar_releases.Rd:29: Lost braces; missing escapes or markup?
29 | "GET "https://jaspar.genereg.net/api/v1/releases/{release_number}/"
| ^
checkRd: (-1) rba_jaspar_sites.Rd:25: Lost braces; missing escapes or markup?
25 | "GET "https://jaspar.genereg.net/api/v1/sites/{matrix_id}/"
| ^
checkRd: (-1) rba_jaspar_species_matrices.Rd:61: Lost braces; missing escapes or markup?
61 | "GET "https://jaspar.genereg.net/api/v1/species/{tax_id}/"
| ^
checkRd: (-1) rba_jaspar_taxons_matrices.Rd:63: Lost braces; missing escapes or markup?
63 | "GET "https://jaspar.genereg.net/api/v1/taxon/{tax_group}/"
| ^
checkRd: (-1) rba_jaspar_tffm.Rd:26: Lost braces; missing escapes or markup?
26 | "GET "https://jaspar.genereg.net/api/v1/fttm/{tffm_id}/"
| ^
checkRd: (-1) rba_mieaa_cats.Rd:40: Lost braces; missing escapes or markup?
40 | "GET "https://ccb-compute2.cs.uni-saarland.de/mieaa2/api/v1/enrichment_categories/{species}/{mirna_type}/"
| ^
checkRd: (-1) rba_mieaa_cats.Rd:40: Lost braces; missing escapes or markup?
40 | "GET "https://ccb-compute2.cs.uni-saarland.de/mieaa2/api/v1/enrichment_categories/{species}/{mirna_type}/"
| ^
checkRd: (-1) rba_mieaa_enrich_results.Rd:38: Lost braces; missing escapes or markup?
38 | "GET https://ccb-compute2.cs.uni-saarland.de/mieaa2/api/v1/results/{job_id}"
| ^
checkRd: (-1) rba_mieaa_enrich_status.Rd:34: Lost braces; missing escapes or markup?
34 | "GET https://ccb-compute2.cs.uni-saarland.de/mieaa2/api/v1/job_status/{job_id}"
| ^
checkRd: (-1) rba_mieaa_enrich_submit.Rd:100: Lost braces; missing escapes or markup?
100 | "POST https://ccb-compute2.cs.uni-saarland.de/mieaa2/api/v1/enrichment_analysis/{species}/{type}/{test}/"
| ^
checkRd: (-1) rba_mieaa_enrich_submit.Rd:100: Lost braces; missing escapes or markup?
100 | "POST https://ccb-compute2.cs.uni-saarland.de/mieaa2/api/v1/enrichment_analysis/{species}/{type}/{test}/"
| ^
checkRd: (-1) rba_mieaa_enrich_submit.Rd:100: Lost braces; missing escapes or markup?
100 | "POST https://ccb-compute2.cs.uni-saarland.de/mieaa2/api/v1/enrichment_analysis/{species}/{type}/{test}/"
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:63: Lost braces; missing escapes or markup?
63 | GET https://reactome.org/AnalysisService/download/{token}/entities/
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:64: Lost braces; missing escapes or markup?
64 | found/{resource}/{filename}.csv"
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:64: Lost braces; missing escapes or markup?
64 | found/{resource}/{filename}.csv"
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:65: Lost braces; missing escapes or markup?
65 | GET https://reactome.org/AnalysisService//download/{token}/entities/
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:66: Lost braces; missing escapes or markup?
66 | notfound/{filename}.csv"
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:67: Lost braces; missing escapes or markup?
67 | GET https://reactome.org/AnalysisService/download/{token}/pathways/
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:68: Lost braces; missing escapes or markup?
68 | {resource}/{filename}.csv"
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:68: Lost braces; missing escapes or markup?
68 | {resource}/{filename}.csv"
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:69: Lost braces; missing escapes or markup?
69 | GET https://reactome.org/AnalysisService/download/{token}/result.json"
| ^
checkRd: (-1) rba_reactome_analysis_download.Rd:70: Lost braces; missing escapes or markup?
70 | GET https://reactome.org/AnalysisService/download/{token}/result.json.gz"
| ^
checkRd: (-1) rba_reactome_analysis_pdf.Rd:75: Lost braces; missing escapes or markup?
75 | "GET https://reactome.org/AnalysisService/report/{token}/{species}/
| ^
checkRd: (-1) rba_reactome_analysis_pdf.Rd:75: Lost braces; missing escapes or markup?
75 | "GET https://reactome.org/AnalysisService/report/{token}/{species}/
| ^
checkRd: (-1) rba_reactome_analysis_pdf.Rd:76: Lost braces; missing escapes or markup?
76 | {filename}.pdf"
| ^
checkRd: (-1) rba_reactome_analysis_species.Rd:69: Lost braces; missing escapes or markup?
69 | "GET https://reactome.org/AnalysisService/species/homoSapiens/{species}"
| ^
checkRd: (-1) rba_reactome_analysis_token.Rd:79: Lost braces; missing escapes or markup?
79 | "GET https://reactome.org/AnalysisService/token/{token}"
| ^
checkRd: (-1) rba_reactome_complex_list.Rd:29: Lost braces; missing escapes or markup?
29 | "GET https://reactome.org/ContentService/data/complexes/{resource}/
| ^
checkRd: (-1) rba_reactome_complex_list.Rd:30: Lost braces; missing escapes or markup?
30 | {identifier}"
| ^
checkRd: (-1) rba_reactome_complex_subunits.Rd:33: Lost braces; missing escapes or markup?
33 | "GET https://reactome.org/ContentService/data/complex/{id}/subunits"
| ^
checkRd: (-1) rba_reactome_entity_other_forms.Rd:30: Lost braces; missing escapes or markup?
30 | "GET https://reactome.org/ContentService/data/entity/{id}/otherForms"
| ^
checkRd: (-1) rba_reactome_event_ancestors.Rd:36: Lost braces; missing escapes or markup?
36 | "GET https://reactome.org/ContentService/data/event/{id}/ancestors"
| ^
checkRd: (-1) rba_reactome_event_hierarchy.Rd:39: Lost braces; missing escapes or markup?
39 | "GET https://reactome.org/ContentService/data/eventsHierarchy/{species}"
| ^
checkRd: (-1) rba_reactome_exporter_diagram.Rd:117: Lost braces; missing escapes or markup?
117 | "GET https://reactome.org/ContentService/exporter/diagram/{identifier}
| ^
checkRd: (-1) rba_reactome_exporter_diagram.Rd:118: Lost braces; missing escapes or markup?
118 | .{ext}"
| ^
checkRd: (-1) rba_reactome_exporter_diagram.Rd:120: Lost braces; missing escapes or markup?
120 | {identifier}.pdf"
| ^
checkRd: (-1) rba_reactome_exporter_event.Rd:33: Lost braces; missing escapes or markup?
33 | {identifier}.sbgn"
| ^
checkRd: (-1) rba_reactome_exporter_event.Rd:35: Lost braces; missing escapes or markup?
35 | {identifier}.sbml"
| ^
checkRd: (-1) rba_reactome_exporter_overview.Rd:84: Lost braces; missing escapes or markup?
84 | "GET https://reactome.org/ContentService/exporter/fireworks/{species}.{ext}"
| ^
checkRd: (-1) rba_reactome_exporter_overview.Rd:84: Lost braces; missing escapes or markup?
84 | "GET https://reactome.org/ContentService/exporter/fireworks/{species}.{ext}"
| ^
checkRd: (-1) rba_reactome_exporter_reaction.Rd:88: Lost braces; missing escapes or markup?
88 | {identifier}.{ext}"
| ^
checkRd: (-1) rba_reactome_exporter_reaction.Rd:88: Lost braces; missing escapes or markup?
88 | {identifier}.{ext}"
| ^
checkRd: (-1) rba_reactome_interactors_psicquic.Rd:44: Lost braces; missing escapes or markup?
44 | {resource}/details"
| ^
checkRd: (-1) rba_reactome_interactors_psicquic.Rd:46: Lost braces; missing escapes or markup?
46 | {resource}/summary"
| ^
checkRd: (-1) rba_reactome_mapping.Rd:38: Lost braces; missing escapes or markup?
38 | "GET https://reactome.org/ContentService/data/mapping/{resource}/
| ^
checkRd: (-1) rba_reactome_mapping.Rd:39: Lost braces; missing escapes or markup?
39 | {identifier}/pathways"
| ^
checkRd: (-1) rba_reactome_mapping.Rd:40: Lost braces; missing escapes or markup?
40 | \cr "GET https://reactome.org/ContentService/data/mapping/{resource}/
| ^
checkRd: (-1) rba_reactome_mapping.Rd:41: Lost braces; missing escapes or markup?
41 | {identifier}/reactions"
| ^
checkRd: (-1) rba_reactome_orthology.Rd:41: Lost braces; missing escapes or markup?
41 | species/{speciesId}"
| ^
checkRd: (-1) rba_reactome_participant_of.Rd:26: Lost braces; missing escapes or markup?
26 | "GET https://reactome.org/ContentService/data/entity/{id}/componentOf"
| ^
checkRd: (-1) rba_reactome_participants.Rd:59: Lost braces; missing escapes or markup?
59 | "GET https://reactome.org/ContentService/data/participants/{id}"
| ^
checkRd: (-1) rba_reactome_participants.Rd:60: Lost braces; missing escapes or markup?
60 | \cr "GET https://reactome.org/ContentService/data/participants/{id}/
| ^
checkRd: (-1) rba_reactome_participants.Rd:62: Lost braces; missing escapes or markup?
62 | \cr "GET https://reactome.org/ContentService/data/participants/{id}/
| ^
checkRd: (-1) rba_reactome_pathways_events.Rd:40: Lost braces; missing escapes or markup?
40 | "GET https://reactome.org/ContentService/data/pathway/{id}/
| ^
checkRd: (-1) rba_reactome_pathways_events.Rd:42: Lost braces; missing escapes or markup?
42 | \cr "GET https://reactome.org/ContentService/data/pathway/{id}/
| ^
checkRd: (-1) rba_reactome_pathways_events.Rd:43: Lost braces; missing escapes or markup?
43 | containedEvents/{attributeName}"
| ^
checkRd: (-1) rba_reactome_pathways_low.Rd:47: Lost braces; missing escapes or markup?
47 | "GET https://reactome.org/ContentService/data/pathways/low/entity/{id}"
| ^
checkRd: (-1) rba_reactome_pathways_low.Rd:49: Lost braces; missing escapes or markup?
49 | entity/{id}"
| ^
checkRd: (-1) rba_reactome_pathways_low.Rd:51: Lost braces; missing escapes or markup?
51 | entity/{id}/allForms"
| ^
checkRd: (-1) rba_reactome_pathways_top.Rd:37: Lost braces; missing escapes or markup?
37 | "GET https://reactome.org/ContentService/data/pathways/top/{species}"
| ^
checkRd: (-1) rba_reactome_people_name.Rd:28: Lost braces; missing escapes or markup?
28 | "GET https://reactome.org/ContentService/data/people/name/{name}"
| ^
checkRd: (-1) rba_reactome_people_name.Rd:29: Lost braces; missing escapes or markup?
29 | \cr "GET https://reactome.org/ContentService/data/people/name/{name}/exact"
| ^
checkRd: (-1) rba_reactome_query.Rd:46: Lost braces; missing escapes or markup?
46 | \cr "GET https://reactome.org/ContentService/data/query/{id}"
| ^
checkRd: (-1) rba_reactome_query.Rd:47: Lost braces; missing escapes or markup?
47 | \cr s"GET https://reactome.org/ContentService//data/query/enhanced/{id}"
| ^
checkRd: (-1) rba_reactome_query.Rd:48: Lost braces; missing escapes or markup?
48 | \cr "GET https://reactome.org/ContentService/data/query/{id}/{attributeName}"
| ^
checkRd: (-1) rba_reactome_query.Rd:48: Lost braces; missing escapes or markup?
48 | \cr "GET https://reactome.org/ContentService/data/query/{id}/{attributeName}"
| ^
checkRd: (-1) rba_reactome_xref.Rd:34: Lost braces; missing escapes or markup?
34 | "GET https://reactome.org/ContentService/references/mapping/{identifier}"
| ^
checkRd: (-1) rba_uniprot_antigens.Rd:27: Lost braces; missing escapes or markup?
27 | "GET https://www.ebi.ac.uk/proteins/api/antigen/{accession}"
| ^
checkRd: (-1) rba_uniprot_coordinates.Rd:40: Lost braces; missing escapes or markup?
40 | "GET https://ebi.ac.uk/proteins/api/coordinates/{accession}"
| ^
checkRd: (-1) rba_uniprot_coordinates.Rd:41: Lost braces; missing escapes or markup?
41 | \cr "GET https://ebi.ac.uk/proteins/api/coordinates/{dbtype}:{dbid}"
| ^
checkRd: (-1) rba_uniprot_coordinates.Rd:41: Lost braces; missing escapes or markup?
41 | \cr "GET https://ebi.ac.uk/proteins/api/coordinates/{dbtype}:{dbid}"
| ^
checkRd: (-1) rba_uniprot_coordinates_location.Rd:43: Lost braces; missing escapes or markup?
43 | "GET https://ebi.ac.uk/proteins/api/coordinates/{taxonomy}/{locations}/feature"
| ^
checkRd: (-1) rba_uniprot_coordinates_location.Rd:43: Lost braces; missing escapes or markup?
43 | "GET https://ebi.ac.uk/proteins/api/coordinates/{taxonomy}/{locations}/feature"
| ^
checkRd: (-1) rba_uniprot_coordinates_location.Rd:44: Lost braces; missing escapes or markup?
44 | \cr "GET https://ebi.ac.uk/proteins/api/coordinates/{taxonomy}/{locations}"
| ^
checkRd: (-1) rba_uniprot_coordinates_location.Rd:44: Lost braces; missing escapes or markup?
44 | \cr "GET https://ebi.ac.uk/proteins/api/coordinates/{taxonomy}/{locations}"
| ^
checkRd: (-1) rba_uniprot_coordinates_sequence.Rd:46: Lost braces; missing escapes or markup?
46 | "GET https://ebi.ac.uk/proteins/api/coordinates/location/{accession}:{pPosition}"
| ^
checkRd: (-1) rba_uniprot_coordinates_sequence.Rd:46: Lost braces; missing escapes or markup?
46 | "GET https://ebi.ac.uk/proteins/api/coordinates/location/{accession}:{pPosition}"
| ^
checkRd: (-1) rba_uniprot_coordinates_sequence.Rd:47: Lost braces; missing escapes or markup?
47 | \cr "GET https://ebi.ac.uk/proteins/api/coordinates/location/{accession}:{pStart}-{pEnd}"
| ^
checkRd: (-1) rba_uniprot_coordinates_sequence.Rd:47: Lost braces; missing escapes or markup?
47 | \cr "GET https://ebi.ac.uk/proteins/api/coordinates/location/{accession}:{pStart}-{pEnd}"
| ^
checkRd: (-1) rba_uniprot_coordinates_sequence.Rd:47: Lost braces; missing escapes or markup?
47 | \cr "GET https://ebi.ac.uk/proteins/api/coordinates/location/{accession}:{pStart}-{pEnd}"
| ^
checkRd: (-1) rba_uniprot_features.Rd:43: Lost braces; missing escapes or markup?
43 | "GET https://www.ebi.ac.uk/proteins/api/features/{accession}"
| ^
checkRd: (-1) rba_uniprot_genecentric.Rd:28: Lost braces; missing escapes or markup?
28 | "GET https://ebi.ac.uk/proteins/api/genecentric/{accession}"
| ^
checkRd: (-1) rba_uniprot_mutagenesis.Rd:32: Lost braces; missing escapes or markup?
32 | "GET https://www.ebi.ac.uk/proteins/api/mutagenesis/{accession}"
| ^
checkRd: (-1) rba_uniprot_proteins.Rd:37: Lost braces; missing escapes or markup?
37 | "GET https://ebi.ac.uk/proteins/api/proteins/{accession}"
| ^
checkRd: (-1) rba_uniprot_proteins.Rd:38: Lost braces; missing escapes or markup?
38 | \cr "GET https://ebi.ac.uk/proteins/api/proteins/interaction/{accession}"
| ^
checkRd: (-1) rba_uniprot_proteins.Rd:39: Lost braces; missing escapes or markup?
39 | \cr "GET https://ebi.ac.uk/proteins/api/proteins/{accession}/isoforms"
| ^
checkRd: (-1) rba_uniprot_proteins_crossref.Rd:46: Lost braces; missing escapes or markup?
46 | "GET https://www.ebi.ac.uk/proteins/api/proteins/{dbtype}:{dbid}"
| ^
checkRd: (-1) rba_uniprot_proteins_crossref.Rd:46: Lost braces; missing escapes or markup?
46 | "GET https://www.ebi.ac.uk/proteins/api/proteins/{dbtype}:{dbid}"
| ^
checkRd: (-1) rba_uniprot_proteomes.Rd:38: Lost braces; missing escapes or markup?
38 | "GET https://ebi.ac.uk/proteins/api/proteomes/proteins/{upid}"
| ^
checkRd: (-1) rba_uniprot_proteomes.Rd:39: Lost braces; missing escapes or markup?
39 | \cr "GET https://ebi.ac.uk/proteins/api/proteomes/{upid}"
| ^
checkRd: (-1) rba_uniprot_proteomics.Rd:27: Lost braces; missing escapes or markup?
27 | "GET https://www.ebi.ac.uk/proteins/api/proteomics/{accession}"
| ^
checkRd: (-1) rba_uniprot_ptm.Rd:33: Lost braces; missing escapes or markup?
33 | "GET https://www.ebi.ac.uk/proteins/api/proteomics-ptm/{accession}"
| ^
checkRd: (-1) rba_uniprot_taxonomy.Rd:53: Lost braces; missing escapes or markup?
53 | "GET https://ebi.ac.uk/proteins/api/ids/{ids}"
| ^
checkRd: (-1) rba_uniprot_taxonomy.Rd:54: Lost braces; missing escapes or markup?
54 | \cr "GET https://ebi.ac.uk/proteins/api/ids//id/{id}/node"
| ^
checkRd: (-1) rba_uniprot_taxonomy.Rd:55: Lost braces; missing escapes or markup?
55 | \cr "GET https://ebi.ac.uk/proteins/api/id/{id}/node"
| ^
checkRd: (-1) rba_uniprot_taxonomy.Rd:56: Lost braces; missing escapes or markup?
56 | \cr "GET https://ebi.ac.uk/proteins/api/id/{id}/children"
| ^
checkRd: (-1) rba_uniprot_taxonomy.Rd:57: Lost braces; missing escapes or markup?
57 | \cr "GET https://ebi.ac.uk/proteins/api/id/{id}/children/node"
| ^
checkRd: (-1) rba_uniprot_taxonomy.Rd:58: Lost braces; missing escapes or markup?
58 | \cr "GET https://ebi.ac.uk/proteins/api/id/{id}/parent"
| ^
checkRd: (-1) rba_uniprot_taxonomy.Rd:59: Lost braces; missing escapes or markup?
59 | \cr "GET https://ebi.ac.uk/proteins/api/id/{id}/parent/node"
| ^
checkRd: (-1) rba_uniprot_taxonomy.Rd:60: Lost braces; missing escapes or markup?
60 | \cr "GET https://ebi.ac.uk/proteins/api/id/{id}/siblings"
| ^
checkRd: (-1) rba_uniprot_taxonomy.Rd:61: Lost braces; missing escapes or markup?
61 | \cr "GET https://ebi.ac.uk/proteins/api/id/{id}/siblings/node"
| ^
checkRd: (-1) rba_uniprot_taxonomy_lca.Rd:28: Lost braces; missing escapes or markup?
28 | "GET https://ebi.ac.uk/proteins/api/ancestor/{ids}"
| ^
checkRd: (-1) rba_uniprot_taxonomy_lineage.Rd:28: Lost braces; missing escapes or markup?
28 | "GET https://ebi.ac.uk/proteins/api/lineage/{id}"
| ^
checkRd: (-1) rba_uniprot_taxonomy_lineage.Rd:29: Lost braces; missing escapes or markup?
29 | \cr "GET https://ebi.ac.uk/proteins/api/lineage/{id}"
| ^
checkRd: (-1) rba_uniprot_taxonomy_name.Rd:51: Lost braces; missing escapes or markup?
51 | "GET https://ebi.ac.uk/proteins/api/name/{name}"
| ^
checkRd: (-1) rba_uniprot_taxonomy_name.Rd:52: Lost braces; missing escapes or markup?
52 | \cr "GET https://ebi.ac.uk/proteins/api/name/{name}/node"
| ^
checkRd: (-1) rba_uniprot_uniparc.Rd:62: Lost braces; missing escapes or markup?
62 | "GET https://ebi.ac.uk/proteins/api/uniparc/accession/{accession} "
| ^
checkRd: (-1) rba_uniprot_uniparc.Rd:63: Lost braces; missing escapes or markup?
63 | \cr "GET https://ebi.ac.uk/proteins/api/uniparc/dbreference/{dbid}"
| ^
checkRd: (-1) rba_uniprot_uniparc.Rd:64: Lost braces; missing escapes or markup?
64 | \cr "GET https://ebi.ac.uk/proteins/api/uniparc/proteome/{upid}"
| ^
checkRd: (-1) rba_uniprot_uniparc.Rd:65: Lost braces; missing escapes or markup?
65 | \cr "GET https://ebi.ac.uk/proteins/api/uniparc/upi/{upi}"
| ^
checkRd: (-1) rba_uniprot_variation.Rd:66: Lost braces; missing escapes or markup?
66 | "GET https://www.ebi.ac.uk/proteins/api/variation/dbsnp/{dbid}"
| ^
checkRd: (-1) rba_uniprot_variation.Rd:67: Lost braces; missing escapes or markup?
67 | \cr "GET https://www.ebi.ac.uk/proteins/api/variation/hgvs/{hgvs}"
| ^
checkRd: (-1) rba_uniprot_variation.Rd:68: Lost braces; missing escapes or markup?
68 | \cr "GET https://www.ebi.ac.uk/proteins/api/variation/{accession}"
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... OK
Running ‘testthat.R’
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [40s/172s] OK
- checking PDF version of manual ... [18s/22s] OK
- checking HTML version of manual ... [10s/14s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 NOTE