- using R Under development (unstable) (2024-05-07 r86527)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 18.1.5
flang-new version 18.1.5
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘parameters/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘parameters’ version ‘0.21.6’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Packages suggested but not available for checking: 'BayesFM', 'ivprobit'
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘parameters’ can be installed ... [48s/73s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [147s/182s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [59s/74s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [249s/145s] ERROR
Running ‘testthat.R’ [248s/144s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(parameters)
> library(testthat)
>
> test_check("parameters")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 97 | PASS 654 ]
══ Skipped tests (97) ══════════════════════════════════════════════════════════
• BayesFM cannot be loaded (1): 'test-model_parameters.efa_cfa.R:69:3'
• On CRAN (84): 'test-GLMMadaptive.R:1:1', 'test-backticks.R:1:1',
'test-bootstrap_emmeans.R:1:1', 'test-bootstrap_parameters.R:1:1',
'test-compare_parameters.R:91:7', 'test-compare_parameters.R:95:5',
'test-complete_separation.R:15:7', 'test-complete_separation.R:27:7',
'test-complete_separation.R:40:7', 'test-efa.R:1:1',
'test-emmGrid-df_colname.R:1:1', 'test-equivalence_test.R:8:3',
'test-format_model_parameters2.R:2:3', 'test-gam.R:30:1',
'test-get_scores.R:1:1', 'test-glmer.R:1:1', 'test-glmmTMB-2.R:1:1',
'test-glmmTMB-profile_CI.R:2:3', 'test-glmmTMB.R:8:1', 'test-helper.R:1:1',
'test-ivreg.R:54:3', 'test-include_reference.R:15:3', 'test-lmerTest.R:1:1',
'test-mipo.R:19:3', 'test-mipo.R:33:3', 'test-mmrm.R:1:1',
'test-model_parameters.anova.R:1:1', 'test-model_parameters.aov.R:1:1',
'test-model_parameters.aov_es_ci.R:158:3',
'test-model_parameters.aov_es_ci.R:269:3',
'test-model_parameters.aov_es_ci.R:318:3',
'test-model_parameters.aov_es_ci.R:371:3',
'test-model_parameters.bracl.R:5:1', 'test-model_parameters.cgam.R:1:1',
'test-model_parameters.epi2x2.R:1:1',
'test-model_parameters.fixest_multi.R:3:1',
'test-model_parameters.fixest.R:2:3', 'test-model_parameters.fixest.R:77:3',
'test-model_parameters.ggeffects.R:12:3', 'test-model_parameters.glm.R:40:3',
'test-model_parameters.glm.R:68:3', 'test-model_parameters.logistf.R:1:1',
'test-model_parameters.mclogit.R:5:1',
'test-model_parameters.mediate.R:32:3', 'test-model_parameters.mixed.R:2:1',
'test-model_parameters.nnet.R:5:1', 'test-model_parameters_df.R:1:1',
'test-model_parameters.vgam.R:3:1', 'test-model_parameters_ordinal.R:1:1',
'test-model_parameters_random_pars.R:1:1', 'test-model_parameters_std.R:1:1',
'test-model_parameters_std_mixed.R:3:1', 'test-n_factors.R:10:3',
'test-n_factors.R:26:3', 'test-n_factors.R:76:3', 'test-p_adjust.R:1:1',
'test-p_value.R:14:1', 'test-panelr.R:1:1', 'test-pipe.R:1:1',
'test-plm.R:111:3', 'test-posterior.R:2:1', 'test-printing-stan.R:2:1',
'test-printing.R:1:1', 'test-pool_parameters.R:11:3', 'test-quantreg.R:1:1',
'test-random_effects_ci.R:4:1', 'test-robust.R:2:1', 'test-rstanarm.R:3:1',
'test-serp.R:17:5', 'test-printing2.R:15:7', 'test-printing2.R:22:7',
'test-printing2.R:27:7', 'test-printing2.R:32:7', 'test-printing2.R:37:7',
'test-printing2.R:49:7', 'test-printing2.R:91:7',
'test-visualisation_recipe.R:7:3', 'test-standardize_parameters.R:30:3',
'test-standardize_parameters.R:55:3', 'test-standardize_parameters.R:169:3',
'test-standardize_parameters.R:288:3', 'test-standardize_parameters.R:319:3',
'test-standardize_parameters.R:411:3', 'test-standardize_parameters.R:501:3'
• On Linux (5): 'test-model_parameters.BFBayesFactor.R:1:1',
'test-nestedLogit.R:78:3', 'test-random_effects_ci-glmmTMB.R:3:1',
'test-simulate_model.R:1:1', 'test-simulate_parameters.R:1:1'
• TODO: fix this test (1): 'test-model_parameters.lqmm.R:40:3'
• TODO: this one actually is not correct. (1):
'test-model_parameters_robust.R:142:3'
• empty test (5): 'test-wrs2.R:8:1', 'test-wrs2.R:18:1', 'test-wrs2.R:30:1',
'test-wrs2.R:43:1', 'test-wrs2.R:55:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-marginaleffects.R:11:3'): marginaleffects() ──────────────────
Names of `out` ('Parameter', 'Comparison', 'Coefficient', 'SE', 'Statistic', 'p', 'S', 'CI', 'CI_low', 'CI_high', 'predicted_lo', 'predicted_hi', 'Predicted') don't match 'Parameter', 'Coefficient', 'SE', 'Statistic', 'p', 'S', 'CI', 'CI_low', 'CI_high'
[ FAIL 1 | WARN 0 | SKIP 97 | PASS 654 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... OK
- checking PDF version of manual ... [18s/26s] OK
- checking HTML version of manual ... [13s/19s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE