• using R Under development (unstable) (2024-04-29 r86495)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-13 (Debian 13.2.0-23) 13.2.0     GNU Fortran (Debian 13.2.0-23) 13.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘bayesMeanScale/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘bayesMeanScale’ version ‘0.1.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘bayesMeanScale’ can be installed ... WARNING Found the following significant warnings:   Warning: namespace ‘rstanarm’ is not available and has been replaced   Warning: namespace ‘rstan’ is not available and has been replaced See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/27s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [12s/21s] ERROR   Running ‘testthat.R’ [12s/20s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(bayesMeanScale)   >   > test_check("bayesMeanScale")   Loading required package: rstan   Loading required package: StanHeaders      rstan version 2.32.6 (Stan version 2.32.2)      For execution on a local, multicore CPU with excess RAM we recommend calling   options(mc.cores = parallel::detectCores()).   To avoid recompilation of unchanged Stan programs, we recommend calling   rstan_options(auto_write = TRUE)   For within-chain threading using `reduce_sum()` or `map_rect()` Stan functions,   change `threads_per_chain` option:   rstan_options(threads_per_chain = 1)      [ FAIL 38 | WARN 0 | SKIP 0 | PASS 55 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-bayes-count-marg-effects.R:5:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-marg-effects.R:6:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-marg-effects.R:7:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-marg-effects.R:8:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-marg-effects.R:9:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-marg-effects.R:11:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-marg-effects.R:12:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-marg-effects.R:13:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-marg-effects.R:14:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-marg-effects.R:15:3'): make sure all configurations of bayesCountMargEffF run without error ──   Expected `bayesCountMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Error ('test-bayes-count-marg-effects.R:21:3'): make sure all configurations of bayesCountMargEffF run without warning ──   Error: All variables in all chains must have the same length.   Backtrace:        ▆     1. ├─testthat::expect_no_warning(...) at test-bayes-count-marg-effects.R:21:3     2. │ └─testthat:::expect_no_(...)     3. │ └─testthat:::quasi_capture(enquo(object), NULL, capture)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─rlang::try_fetch(...)     6. │ │ └─base::withCallingHandlers(...)     7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     8. └─bayesMeanScale::bayesCountMargEffF(...)     9. ├─base::sample(...)    10. ├─base::nrow(posterior::as_draws_df(model))    11. ├─posterior::as_draws_df(model)    12. └─posterior:::as_draws_df.default(model)    13. ├─posterior::as_draws(x)    14. └─posterior:::as_draws.default(x)    15. └─posterior (local) fun(x, ...)    16. └─posterior:::stop_no_call("All variables in all chains must have the same length.")   ── Failure ('test-bayes-count-preds.R:5:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-preds.R:6:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-preds.R:7:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-preds.R:8:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-preds.R:9:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-preds.R:11:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-preds.R:12:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-preds.R:13:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-preds.R:14:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-count-preds.R:15:3'): make sure all configurations of bayesCountPredsF run without error ──   Expected `bayesCountPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Error ('test-bayes-count-preds.R:21:3'): make sure all configurations of bayesCountPredsF run without warning ──   Error: All variables in all chains must have the same length.   Backtrace:        ▆     1. ├─testthat::expect_no_warning(...) at test-bayes-count-preds.R:21:3     2. │ └─testthat:::expect_no_(...)     3. │ └─testthat:::quasi_capture(enquo(object), NULL, capture)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─rlang::try_fetch(...)     6. │ │ └─base::withCallingHandlers(...)     7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     8. └─bayesMeanScale::bayesCountPredsF(...)     9. ├─base::sample(...)    10. ├─base::nrow(posterior::as_draws_df(model))    11. ├─posterior::as_draws_df(model)    12. └─posterior:::as_draws_df.default(model)    13. ├─posterior::as_draws(x)    14. └─posterior:::as_draws.default(x)    15. └─posterior (local) fun(x, ...)    16. └─posterior:::stop_no_call("All variables in all chains must have the same length.")   ── Error ('test-bayes-count-preds.R:37:1'): (code run outside of `test_that()`) ──   Error: All variables in all chains must have the same length.   Backtrace:        ▆     1. ├─... %>% subset(., select = c(mean)) at test-bayes-count-preds.R:37:1     2. ├─base::subset(., select = c(mean))     3. └─bayesMeanScale::bayesCountPredsF(...)     4. ├─base::sample(...)     5. ├─base::nrow(posterior::as_draws_df(model))     6. ├─posterior::as_draws_df(model)     7. └─posterior:::as_draws_df.default(model)     8. ├─posterior::as_draws(x)     9. └─posterior:::as_draws.default(x)    10. └─posterior (local) fun(x, ...)    11. └─posterior:::stop_no_call("All variables in all chains must have the same length.")   ── Failure ('test-bayes-preds.R:5:3'): make sure all configurations of bayesPredsF run without error ──   Expected `bayesPredsF(logitModel2, at = list(educ = c(0, 12)), n_draws = 500)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-preds.R:6:3'): make sure all configurations of bayesPredsF run without error ──   Expected `bayesPredsF(logitModel, at = list(educ = c(0, 12)), n_draws = 500)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-preds.R:7:3'): make sure all configurations of bayesPredsF run without error ──   Expected `bayesPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-preds.R:8:3'): make sure all configurations of bayesPredsF run without error ──   Expected `bayesPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-bayes-preds.R:9:3'): make sure all configurations of bayesPredsF run without error ──   Expected `bayesPredsF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Error ('test-bayes-preds.R:15:3'): make sure all configurations of bayesPredsF run without warning ──   Error: All variables in all chains must have the same length.   Backtrace:        ▆     1. ├─testthat::expect_no_warning(...) at test-bayes-preds.R:15:3     2. │ └─testthat:::expect_no_(...)     3. │ └─testthat:::quasi_capture(enquo(object), NULL, capture)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─rlang::try_fetch(...)     6. │ │ └─base::withCallingHandlers(...)     7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     8. └─bayesMeanScale::bayesPredsF(...)     9. ├─base::sample(...)    10. ├─base::nrow(posterior::as_draws_df(model))    11. ├─posterior::as_draws_df(model)    12. └─posterior:::as_draws_df.default(model)    13. ├─posterior::as_draws(x)    14. └─posterior:::as_draws.default(x)    15. └─posterior (local) fun(x, ...)    16. └─posterior:::stop_no_call("All variables in all chains must have the same length.")   ── Error ('test-marg-compare-error-check.R:3:1'): (code run outside of `test_that()`) ──   Error: All variables in all chains must have the same length.   Backtrace:       ▆    1. └─bayesMeanScale::bayesMargEffF(...) at test-marg-compare-error-check.R:3:1    2. ├─base::sample(...)    3. ├─base::nrow(posterior::as_draws_df(model))    4. ├─posterior::as_draws_df(model)    5. └─posterior:::as_draws_df.default(model)    6. ├─posterior::as_draws(x)    7. └─posterior:::as_draws.default(x)    8. └─posterior (local) fun(x, ...)    9. └─posterior:::stop_no_call("All variables in all chains must have the same length.")   ── Error ('test-marg-compare.R:2:1'): (code run outside of `test_that()`) ──────   Error: All variables in all chains must have the same length.   Backtrace:       ▆    1. └─bayesMeanScale::bayesMargEffF(...) at test-marg-compare.R:2:1    2. ├─base::sample(...)    3. ├─base::nrow(posterior::as_draws_df(model))    4. ├─posterior::as_draws_df(model)    5. └─posterior:::as_draws_df.default(model)    6. ├─posterior::as_draws(x)    7. └─posterior:::as_draws.default(x)    8. └─posterior (local) fun(x, ...)    9. └─posterior:::stop_no_call("All variables in all chains must have the same length.")   ── Failure ('test-marg-effects.R:5:3'): make sure all configurations of bayesMargEffF run without error ──   Expected `bayesMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-marg-effects.R:6:3'): make sure all configurations of bayesMargEffF run without error ──   Expected `bayesMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-marg-effects.R:7:3'): make sure all configurations of bayesMargEffF run without error ──   Expected `bayesMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-marg-effects.R:8:3'): make sure all configurations of bayesMargEffF run without error ──   Expected `bayesMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Failure ('test-marg-effects.R:9:3'): make sure all configurations of bayesMargEffF run without error ──   Expected `bayesMargEffF(...)` to run without any errors.   i Actually got a <simpleError> with text:     All variables in all chains must have the same length.   ── Error ('test-marg-effects.R:15:3'): make sure all configurations of bayesMargEffF run without warning ──   Error: All variables in all chains must have the same length.   Backtrace:        ▆     1. ├─testthat::expect_no_warning(...) at test-marg-effects.R:15:3     2. │ └─testthat:::expect_no_(...)     3. │ └─testthat:::quasi_capture(enquo(object), NULL, capture)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─rlang::try_fetch(...)     6. │ │ └─base::withCallingHandlers(...)     7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     8. └─bayesMeanScale::bayesMargEffF(...)     9. ├─base::sample(...)    10. ├─base::nrow(posterior::as_draws_df(model))    11. ├─posterior::as_draws_df(model)    12. └─posterior:::as_draws_df.default(model)    13. ├─posterior::as_draws(x)    14. └─posterior:::as_draws.default(x)    15. └─posterior (local) fun(x, ...)    16. └─posterior:::stop_no_call("All variables in all chains must have the same length.")   ── Error ('test-marg-effects.R:25:1'): (code run outside of `test_that()`) ─────   Error: All variables in all chains must have the same length.   Backtrace:        ▆     1. ├─... %>% subset(., select = c(mean)) at test-marg-effects.R:25:1     2. ├─base::subset(., select = c(mean))     3. └─bayesMeanScale::bayesMargEffF(...)     4. ├─base::sample(...)     5. ├─base::nrow(posterior::as_draws_df(model))     6. ├─posterior::as_draws_df(model)     7. └─posterior:::as_draws_df.default(model)     8. ├─posterior::as_draws(x)     9. └─posterior:::as_draws.default(x)    10. └─posterior (local) fun(x, ...)    11. └─posterior:::stop_no_call("All variables in all chains must have the same length.")      [ FAIL 38 | WARN 0 | SKIP 0 | PASS 55 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [76s/137s] OK
• checking PDF version of manual ... [4s/11s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 1 WARNING