- using R Under development (unstable) (2024-03-26 r86210)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.2.0-13) 13.2.0
GNU Fortran (Debian 13.2.0-13) 13.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘SPOT/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘SPOT’ version ‘2.11.14’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘SPOT’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/6s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the package can be unloaded cleanly ... [3s/5s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/5s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/5s] OK
- checking loading without being on the library search path ... [3s/5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [32s/53s] OK
- checking Rd files ... [2s/3s] NOTE
checkRd: (-1) buildBO.Rd:22: Lost braces
22 | \item{\code{lambdaLower}}{ lower boundary for log10{lambda}, default is \code{-6}}
| ^
checkRd: (-1) buildBO.Rd:23: Lost braces
23 | \item{\code{lambdaUpper}}{ upper boundary for log10{lambda}, default is \code{0}}
| ^
checkRd: (-1) buildBO.Rd:41: Lost braces
41 | \item{\code{lambdaLower}}{ lower boundary for log10{lambda}, default is \code{-6}}
| ^
checkRd: (-1) buildBO.Rd:42: Lost braces
42 | \item{\code{lambdaUpper}}{ upper boundary for log10{lambda}, default is \code{0}}
| ^
checkRd: (-1) buildKriging.Rd:28: Lost braces
28 | \item{\code{lambdaLower}}{lower boundary for log10{lambda}, default is \code{-6}}
| ^
checkRd: (-1) buildKriging.Rd:29: Lost braces
29 | \item{\code{lambdaUpper}}{upper boundary for log10{lambda}, default is \code{0}}
| ^
checkRd: (-1) checkLowerSmallerThanUpper.Rd:15-19: Lost braces
15 | checkLowerNotEqualsUpper <- function(lower,upper){
| ^
checkRd: (-1) checkLowerSmallerThanUpper.Rd:16-18: Lost braces
16 | if(any(lower == upper)){
| ^
checkRd: (-1) optimDE.Rd:38: Lost braces
38 | code{DEoptim} package. It is basically a wrapper, to enable DEoptim for usage
| ^
checkRd: (-1) optimGenoud.Rd:38: Lost braces
38 | code{rgenoud} package. It is basically a wrapper, to enable genoud for usage
| ^
checkRd: (-1) optimLBFGSB.Rd:40: Lost braces
40 | which is part of the code{stats} package. It is basically a wrapper, to enable L-BFGS-B for usage
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... NOTE
Documented arguments not in \usage in Rd file 'checkFunEvalsDesignSize.Rd':
‘fun’ ‘upper’
Documented arguments not in \usage in Rd file 'print.spotBOModel.Rd':
‘object’
Documented arguments not in \usage in Rd file 'print.spotGaussianProcessModel.Rd':
‘object’
Documented arguments not in \usage in Rd file 'print.spotLOESS.Rd':
‘object’
Documented arguments not in \usage in Rd file 'print.spotLassoModel.Rd':
‘object’
Documented arguments not in \usage in Rd file 'print.spotLinearModel.Rd':
‘object’
Documented arguments not in \usage in Rd file 'print.spotRSM.Rd':
‘object’
Documented arguments not in \usage in Rd file 'print.spotRandomForest.Rd':
‘object’
Documented arguments not in \usage in Rd file 'print.spotRanger.Rd':
‘object’
Documented arguments not in \usage in Rd file 'print.spotSeverity.Rd':
‘object’
Documented arguments not in \usage in Rd file 'print.spotTreeModel.Rd':
‘object’
Documented arguments not in \usage in Rd file 'simulationSpectral.Rd':
‘...’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [3s/4s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [48s/77s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
funGulf 6.115 0.131 10.522
spot 4.487 0.010 7.300
funHelical 3.931 0.067 6.858
runSpotBench 3.872 0.004 6.622
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [75s/111s] OK
Running ‘testthat.R’ [75s/110s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [109s/171s] OK
- checking PDF version of manual ... [12s/23s] OK
- checking HTML version of manual ... [7s/18s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 NOTEs