- using R Under development (unstable) (2024-04-14 r86421)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 18.1.0 (rc4-1)
Debian flang-new version 18.1.0 (rc4-1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘rjtools/DESCRIPTION’ ... OK
- this is package ‘rjtools’ version ‘1.0.12’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘rjtools’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [15s/19s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/2s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [7s/12s] ERROR
Running ‘testthat.R’ [7s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rjtools)
>
> test_check("rjtools")
v SUCCESS: File and directory names are compliant.
x ERROR: File or directory names contain spaces or non-ASCII characters. For portability only use ASCII characters and no spaces in file and directory names.
x ERROR: There are nested subdirectories. Please use at most two directory levels for the article.
x ERROR: File or directory names contain spaces or non-ASCII characters. For portability only use ASCII characters and no spaces in file and directory names.
v SUCCESS: File and directory names are compliant.
v SUCCESS: Article title formatted in title case.
x ERROR: Article title not in title case! Suggest title: ToOoOlTiPs: An R Package for Customizable Tooltips in Interactive Graphics.
v SUCCESS: Section titles formatted in sentence case.
v SUCCESS: Possible motivation letter found: motivation-letter.md
i NOTE: Motivation letter is not detected, if applicable
v SUCCESS: No problematic file found
x ERROR: Submission contains unnecessary files: RJtemplate.tex
v SUCCESS: No spelling mistake detected
v SUCCESS: CRAN activities have been detected for package ggplot2
i NOTE: No CRAN activities detected for package nonexistent
v SUCCESS: All packages marked-up with \CRANpkg or \BIOpkg are available on CRAN or Bioconductor.
i NOTE: 1 package(s) used in the text without \CRANpkg or \BIOpkg commands: ToOoOlTiPs
Vim: Warning: Output is not to a terminal
Vim: Warning: Input is not from a terminal
[m [m [0m [H [2J [24;1H"/tmp/Rtmpm1uR9n/file4726a1d6c1117/testdoc.Rmd"
<mpm1uR9n/file4726a1d6c1117/testdoc.Rmd" 95L, 5248B [1;1H [35m--- [0m
[36mtitle [0m: [31m"ToOoOlTiPs: An R Package for Customizable Tooltips in Interactive Graphii [3;1Hcs" [0m
[36mdate [0m: [31m"2022-11-09" [0m
[36mabstract [0m: >
An abstract of less than 150 words.
[36mdraft [0m: true
[36mauthor [0m:
- [36mname [0m: Quietest Quokka
[36maffiliation [0m: University of Little Mates
[36maddress [0m:
- Department of Letter Q
- Somewhere, Australia
[36murl [0m [1m [37m [41m: https: [0m//www.britannica.com/animal/quokka
[36morcid [0m: 0000-1721-1511-1101
[36memail [0m: qquo@ulm.edu
- [36mname [0m: Bounciest Bilby
[36maffiliation [0m:
- University of Little Mates
- University of Aussie Animals
[36maddress [0m:
- Department of Letter Q, Somewhere, Australia
- Department of Marsupials, Somewhere, Australia [24;63H1,1 [11CTop [1;1H [24;1HVim: Error reading input, exiting...
Vim: Finished.
[24;1H
i Please use the folder 'data/', 'figures/', 'scripts/' and
'motivation-letter/' to organise additional data, figures, scripts,
and motivation letter.
! Please maintain the default file/folder structure as it will be checked
upon submission.
i [Action required] Please align the file name between 'test.Rmd' and
'RJreferences.bib'.
Success: your paper is ready to edit!
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-check.R:115:5'): spelling check works ────────────────────────
c(expr) (`actual`) not equal to "NOTE" (`expected`).
`actual`: "SUCCESS"
`expected`: "NOTE"
Backtrace:
▆
1. └─rjtools (local) expect_NOTE(check_spelling(article_path)) at test-check.R:115:5
2. └─testthat::expect_equal(c(expr), "NOTE") at test-check.R:67:16
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [12s/17s] OK
- checking PDF version of manual ... [5s/7s] OK
- checking HTML version of manual ... [1s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR