- using R Under development (unstable) (2024-04-14 r86421)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 18.1.0 (rc4-1)
Debian flang-new version 18.1.0 (rc4-1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘fields/DESCRIPTION’ ... OK
- this is package ‘fields’ version ‘15.2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘fields’ can be installed ... OK
See the install log for details.
- used C compiler: ‘Debian clang version 18.1.0 (rc4-1)’
- used Fortran compiler: ‘Debian flang-new version 18.1.0 (rc4-1)’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking whether startup messages can be suppressed ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [54s/58s] OK
- checking Rd files ... [2s/2s] NOTE
checkRd: (-1) FORTRAN.internal.Rd:50: Lost braces
50 | \item{evlpoly}{evaluates a univariate polynomial. See code{fields.evlpoly}}
| ^
checkRd: (-1) FORTRAN.internal.Rd:51: Lost braces
51 | \item{evlpoly2}{ evaluates a multivariate polynomial. See code{fields.evlpoly2}}
| ^
checkRd: (-1) registeredC.Rd:77: Lost braces
77 | \item{addToDiagC}{ adds diagonal elements to a matrix. See code{mKrig}.}
| ^
checkRd: (-1) sim.Krig.Rd:200-221: Lost braces
200 | \code{simLocal.spatialProcess}{This function is
| ^
checkRd: (-1) tim.colors.Rd:96: Lost braces
96 | \item{\dots}{Additional plotting arguments to code{image.plot}}
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking usage of KIND in Fortran files ... OK
- checking examples ... [32s/37s] ERROR
Running examples in ‘fields-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: qsreg
> ### Title: Quantile or Robust spline regression
> ### Aliases: qsreg
> ### Keywords: smooth
>
> ### ** Examples
>
>
> # fit a CV quantile spline
> fit50<- qsreg(rat.diet$t,rat.diet$con)
> # (default is .5 so this is an estimate of the conditional median)
> # control group of rats.
> plot( fit50)
plot window will lay out plots in a 2 by 2 matrix
> predict( fit50)
[1] 19.35821 19.17980 18.86549 19.28839 19.89899 21.03033 21.18050 21.50002
[9] 22.79998 25.67707 26.19834 26.38231 24.51828 24.39903 24.84659 26.20001
[17] 26.64902 27.51194 27.55002 27.37895 27.01716 27.60002 27.80378 27.85000
[25] 27.62774 27.80000 28.15312 27.60002 27.44899 27.19901 27.79999 28.19900
[33] 27.99998 27.30002 27.89900 28.69897 28.28679 28.59999 27.50000
> # predicted values at data points
> xg<- seq(0,110,,50)
> plot( fit50$x, fit50$y)
> lines( xg, predict( fit50, xg))
>
> # A robust fit to rat diet data
> #
> SC<- .5* median(abs((rat.diet$con- median(rat.diet$con))))
> fit.robust<- qsreg(rat.diet$t,rat.diet$con, sc= SC)
> plot( fit.robust)
plot window will lay out plots in a 2 by 2 matrix
Error in axis(side = base::quote(1), at = base::quote(1:81), labels = base::quote(c("CV", :
'at' and 'labels' lengths differ, 81 != 2
Calls: plot ... boxplot.default -> do.call -> <Anonymous> -> do.call -> axis
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [86s/102s] OK
Running ‘Krig.Z.test.R’ [2s/2s]
Comparing ‘Krig.Z.test.Rout’ to ‘Krig.Z.test.Rout.save’ ... OK
Running ‘Krig.se.W.R’ [2s/3s]
Comparing ‘Krig.se.W.Rout’ to ‘Krig.se.W.Rout.save’ ... OK
Running ‘Krig.se.grid.test.R’ [2s/2s]
Comparing ‘Krig.se.grid.test.Rout’ to ‘Krig.se.grid.test.Rout.save’ ... OK
Running ‘Krig.se.test.R’ [9s/10s]
Comparing ‘Krig.se.test.Rout’ to ‘Krig.se.test.Rout.save’ ... OK
Running ‘Krig.test.R’ [2s/3s]
Comparing ‘Krig.test.Rout’ to ‘Krig.test.Rout.save’ ... OK
Running ‘Krig.test.W.R’ [2s/2s]
Comparing ‘Krig.test.W.Rout’ to ‘Krig.test.W.Rout.save’ ... OK
Running ‘KrigGCVREML.test.R’ [2s/3s]
Comparing ‘KrigGCVREML.test.Rout’ to ‘KrigGCVREML.test.Rout.save’ ... OK
Running ‘Likelihood.test.R’ [2s/2s]
Comparing ‘Likelihood.test.Rout’ to ‘Likelihood.test.Rout.save’ ... OK
Running ‘SEFixedParameters.R’ [2s/3s]
Comparing ‘SEFixedParameters.Rout’ to ‘SEFixedParameters.Rout.save’ ... OK
Running ‘Tps.test.R’ [4s/5s]
Comparing ‘Tps.test.Rout’ to ‘Tps.test.Rout.save’ ... OK
Running ‘Wend.test.R’ [2s/2s]
Comparing ‘Wend.test.Rout’ to ‘Wend.test.Rout.save’ ... OK
Running ‘cov.test.R’ [2s/2s]
Comparing ‘cov.test.Rout’ to ‘cov.test.Rout.save’ ... OK
Running ‘cov.test2.R’ [2s/2s]
Comparing ‘cov.test2.Rout’ to ‘cov.test2.Rout.save’ ... OK
Running ‘derivative.test.R’ [4s/5s]
Comparing ‘derivative.test.Rout’ to ‘derivative.test.Rout.save’ ... OK
Running ‘diag.multiply.test.R’ [2s/2s]
Comparing ‘diag.multiply.test.Rout’ to ‘diag.multiply.test.Rout.save’ ... OK
Running ‘evlpoly.test.R’ [2s/2s]
Comparing ‘evlpoly.test.Rout’ to ‘evlpoly.test.Rout.save’ ... OK
Running ‘fastTpsPredict.test.R’ [2s/2s]
Comparing ‘fastTpsPredict.test.Rout’ to ‘fastTpsPredict.test.Rout.save’ ... OK
Running ‘mKrig.R’ [0s/0s]
Running ‘mKrig.Z.R’ [2s/3s]
Comparing ‘mKrig.Z.Rout’ to ‘mKrig.Z.Rout.save’ ... OK
Running ‘mKrig.parameters.test.R’ [4s/4s]
Comparing ‘mKrig.parameters.test.Rout’ to ‘mKrig.parameters.test.Rout.save’ ... OK
Running ‘mKrig.se.test.R’ [2s/2s]
Comparing ‘mKrig.se.test.Rout’ to ‘mKrig.se.test.Rout.save’ ... OK
Running ‘mKrig.test.R’ [3s/4s]
Comparing ‘mKrig.test.Rout’ to ‘mKrig.test.Rout.save’ ... OK
Running ‘mKrigMLETest.R’ [9s/10s]
Comparing ‘mKrigMLETest.Rout’ to ‘mKrigMLETest.Rout.save’ ... OK
Running ‘mKrigREMLTest.R’ [5s/6s]
Comparing ‘mKrigREMLTest.Rout’ to ‘mKrigREMLTest.Rout.save’ ... OK
Running ‘misc.test.R’ [2s/2s]
Comparing ‘misc.test.Rout’ to ‘misc.test.Rout.save’ ... OK
Running ‘offGridWeights.test.R’ [2s/2s]
Comparing ‘offGridWeights.test.Rout’ to ‘offGridWeights.test.Rout.save’ ... OK
Running ‘offGridWeightsNew.test.R’ [2s/3s]
Running ‘spam.test.R’ [2s/2s]
Comparing ‘spam.test.Rout’ to ‘spam.test.Rout.save’ ... OK
Running ‘sreg.test.R’ [2s/2s]
Comparing ‘sreg.test.Rout’ to ‘sreg.test.Rout.save’ ... OK
Running ‘testZCommon.R’ [2s/2s]
Comparing ‘testZCommon.Rout’ to ‘testZCommon.Rout.save’ ... OK
Running ‘vgram.test.R’ [2s/2s]
Comparing ‘vgram.test.Rout’ to ‘vgram.test.Rout.save’ ... OK
Running ‘vgram2.test.R’ [2s/2s]
Comparing ‘vgram2.test.Rout’ to ‘vgram2.test.Rout.save’ ... OK
- checking PDF version of manual ... [15s/19s] OK
- checking HTML version of manual ... [9s/12s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE