- using R Under development (unstable) (2024-03-24 r86185)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 18.1.0 (rc4-1)
Debian flang-new version 18.1.0 (rc4-1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘bioassays/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘bioassays’ version ‘1.0.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘bioassays’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s/18s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [7s/9s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [6s/7s] ERROR
Running ‘testthat.R’ [6s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bioassays)
>
> test_check("bioassays")
F1
F2
F3
F4
F1
F2
F3
[ FAIL 4 | WARN 5 | SKIP 0 | PASS 48 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_heatmap.R:15:3'): eg1 heatplate is working ─────────────────────
Error in `.subset2(x, name)`: wrong arguments for subsetting an environment
Backtrace:
▆
1. ├─testthat::expect_identical(eg1$guides[[1]], "coloursteps") at test_heatmap.R:15:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─eg1$guides[[1]]
5. └─ggplot2:::`[[.ggproto`(eg1$guides, 1)
6. └─ggplot2:::fetch_ggproto(x, name)
── Error ('test_heatmap.R:24:3'): eg2 heatplate is working ─────────────────────
Error in `.subset2(x, name)`: wrong arguments for subsetting an environment
Backtrace:
▆
1. ├─testthat::expect_identical(eg2$guides[[1]], "coloursteps") at test_heatmap.R:24:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─eg2$guides[[1]]
5. └─ggplot2:::`[[.ggproto`(eg2$guides, 1)
6. └─ggplot2:::fetch_ggproto(x, name)
── Error ('test_heatmap.R:33:3'): eg3 heatplate is working ─────────────────────
Error in `.subset2(x, name)`: wrong arguments for subsetting an environment
Backtrace:
▆
1. ├─testthat::expect_identical(eg3$guides[[1]], "coloursteps") at test_heatmap.R:33:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─eg3$guides[[1]]
5. └─ggplot2:::`[[.ggproto`(eg3$guides, 1)
6. └─ggplot2:::fetch_ggproto(x, name)
── Error ('test_heatmap.R:43:3'): eg4 heatplate is working ─────────────────────
Error in `.subset2(x, name)`: wrong arguments for subsetting an environment
Backtrace:
▆
1. ├─testthat::expect_identical(eg4$guides[[1]], NULL) at test_heatmap.R:43:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─eg4$guides[[1]]
5. └─ggplot2:::`[[.ggproto`(eg4$guides, 1)
6. └─ggplot2:::fetch_ggproto(x, name)
[ FAIL 4 | WARN 5 | SKIP 0 | PASS 48 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [17s/21s] OK
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [1s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR