Running ‘testthat.r’ [17s/20s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
  > library(testthat)
  > library(rbiom)
  > 
  > test_check("rbiom")
  [ FAIL 1 | WARN 0 | SKIP 33 | PASS 190 ]
  
  ══ Skipped tests (33) ══════════════════════════════════════════════════════════
  • On CRAN (33): 'test-bdiv_heatmap.r:5:3', 'test-bdiv_ord_plot.r:6:3',
    'test-biom_merge.r:11:3', 'test-biom_ply.r:9:3', 'test-biom_ply.r:48:3',
    'test-boxplot_build.r:3:3', 'test-cache.r:3:3', 'test-convert.r:5:3',
    'test-convert.r:24:3', 'test-convert.r:40:3', 'test-corrplot.r:11:3',
    'test-distmat_ord_table.r:6:3', 'test-import_table.r:13:3',
    'test-plot_heatmap.r:15:3', 'test-plot_palettes.r:6:3',
    'test-provenance.r:3:3', 'test-rarefy.r:3:3', 'test-rbiom-deprecated.r:3:3',
    'test-rbiom_objects.r:24:3', 'test-read_biom.r:3:3', 'test-read_fasta.r:3:3',
    'test-read_tree.r:7:3', 'test-s3_methods.r:3:3', 'test-stats_emmeans.r:8:3',
    'test-stats_wilcox.r:3:3', 'test-taxa_heatmap.r:5:3', 'test-taxa_map.r:3:3',
    'test-taxa_stacked.r:5:3', 'test-taxa_table.r:3:3', 'test-utils.r:3:3',
    'test-validate.r:3:3', 'test-write_biom.r:15:3', 'test-write_xlsx.r:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-boxplot.r:7:3'): boxplot ───────────────────────────────────────
  Error in `attributes(.Data) <- c(attributes(.Data), attrib)`: Cannot modify attributes on primitive functions
  Backtrace:
       ▆
    1. ├─testthat::expect_silent(taxa_boxplot(rare5)) at test-boxplot.r:7:3
    2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ ├─withr::with_output_sink(...)
    5. │   │ │ └─base::force(code)
    6. │   │ ├─base::withCallingHandlers(...)
    7. │   │ └─base::withVisible(code)
    8. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. ├─rbiom::taxa_boxplot(rare5)
   10. │ ├─base::with(...)
   11. │ └─base::with.default(...)
   12. │   └─base::eval(substitute(expr), data, enclos = parent.frame())
   13. │     └─base::eval(substitute(expr), data, enclos = parent.frame())
   14. │       ├─base::do.call(stats_boxplot, as.list(environment()))
   15. │       └─rbiom (local) `<fn>`(...)
   16. │         └─rbiom:::boxplot_build(list2env(params))
   17. │           └─params %>% plot_facets() %>% boxplot_stats() %>% plot_build()
   18. └─rbiom:::plot_build(.)
   19.   ├─rbiom:::trans_new(...)
   20.   └─rbiom:::as.cmd(base::sqrt)
   21.     └─base::structure(eval(expr), display = cmd)
  
  [ FAIL 1 | WARN 0 | SKIP 33 | PASS 190 ]
  Error: Test failures
  Execution halted