Error(s) in re-building vignettes:
  ...
--- re-building ‘HE_manova.Rmd’ using rmarkdown
Warning: Duplicated chunk option(s) 'echo' in both chunk header and pipe comments of the chunk 'plastic1a'.
** Processing: fig/manova-addhealth-means-each-1.png
672x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14086 bytes
Input file size = 14956 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12456
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12379
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12379

Output IDAT size = 12379 bytes (1707 bytes decrease)
Output file size = 12457 bytes (2499 bytes = 16.71% decrease)

** Processing: fig/manova-addhealth-means-plot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21705 bytes
Input file size = 21807 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18271
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18271

Output IDAT size = 18271 bytes (3434 bytes decrease)
Output file size = 18349 bytes (3458 bytes = 15.86% decrease)

** Processing: fig/manova-addhealth-covellipse-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58027 bytes
Input file size = 58189 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47848
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47848

Output IDAT size = 47848 bytes (10179 bytes decrease)
Output file size = 47926 bytes (10263 bytes = 17.64% decrease)

** Processing: fig/manova-addhealth-heplot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29031 bytes
Input file size = 29145 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23298
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23298

Output IDAT size = 23298 bytes (5733 bytes decrease)
Output file size = 23376 bytes (5769 bytes = 19.79% decrease)

** Processing: fig/manova-plastic1a-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38511 bytes
Input file size = 38637 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30307
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30307

Output IDAT size = 30307 bytes (8204 bytes decrease)
Output file size = 30385 bytes (8252 bytes = 21.36% decrease)

** Processing: fig/manova-plastic1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44324 bytes
Input file size = 44462 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35142
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35142

Output IDAT size = 35142 bytes (9182 bytes decrease)
Output file size = 35220 bytes (9242 bytes = 20.79% decrease)

** Processing: fig/manova-plastic2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58313 bytes
Input file size = 58475 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47515
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47515

Output IDAT size = 47515 bytes (10798 bytes decrease)
Output file size = 47593 bytes (10882 bytes = 18.61% decrease)

** Processing: fig/manova-jury-mod1-HE-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30324 bytes
Input file size = 30438 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25629
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25629

Output IDAT size = 25629 bytes (4695 bytes decrease)
Output file size = 25707 bytes (4731 bytes = 15.54% decrease)

** Processing: fig/manova-jury-mod1-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 81762 bytes
Input file size = 81948 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 64601
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 64601

Output IDAT size = 64601 bytes (17161 bytes decrease)
Output file size = 64679 bytes (17269 bytes = 21.07% decrease)

** Processing: fig/manova-jury-can1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32755 bytes
Input file size = 32869 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26912
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26912

Output IDAT size = 26912 bytes (5843 bytes decrease)
Output file size = 26990 bytes (5879 bytes = 17.89% decrease)

** Processing: fig/manova-jury-mod2-HE-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34477 bytes
Input file size = 34603 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29948
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29948

Output IDAT size = 29948 bytes (4529 bytes decrease)
Output file size = 30026 bytes (4577 bytes = 13.23% decrease)

** Processing: fig/manova-jury-mod3-eff-1.png
864x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36505 bytes
Input file size = 36631 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30241
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30241

Output IDAT size = 30241 bytes (6264 bytes decrease)
Output file size = 30319 bytes (6312 bytes = 17.23% decrease)

** Processing: fig/manova-skulls4-1.png
672x672 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 33971 bytes
Input file size = 34877 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30313
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30313

Output IDAT size = 30313 bytes (3658 bytes decrease)
Output file size = 30391 bytes (4486 bytes = 12.86% decrease)

** Processing: fig/manova-skulls-bwplot-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48378 bytes
Input file size = 48516 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 38663
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 38663

Output IDAT size = 38663 bytes (9715 bytes decrease)
Output file size = 38741 bytes (9775 bytes = 20.15% decrease)

** Processing: fig/manova-skulls-HE-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 120929 bytes
Input file size = 121175 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 98211
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 98211

Output IDAT size = 98211 bytes (22718 bytes decrease)
Output file size = 98289 bytes (22886 bytes = 18.89% decrease)

--- finished re-building ‘HE_manova.Rmd’

--- re-building ‘HE_mmra.Rmd’ using rmarkdown
** Processing: fig/mmra-rohwer-long-ggplot-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60257 bytes
Input file size = 60419 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47558
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47558

Output IDAT size = 47558 bytes (12699 bytes decrease)
Output file size = 47636 bytes (12783 bytes = 21.16% decrease)

** Processing: fig/mmra-rohwer-coefplot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44972 bytes
Input file size = 45110 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 38348
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 38348

Output IDAT size = 38348 bytes (6624 bytes decrease)
Output file size = 38426 bytes (6684 bytes = 14.82% decrease)

** Processing: fig/mmra-rohwer-coefplot-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48990 bytes
Input file size = 49128 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 41134
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 41134

Output IDAT size = 41134 bytes (7856 bytes decrease)
Output file size = 41212 bytes (7916 bytes = 16.11% decrease)

** Processing: fig/mmra-rohwer-HE1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35873 bytes
Input file size = 35999 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29429
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29429

Output IDAT size = 29429 bytes (6444 bytes decrease)
Output file size = 29507 bytes (6492 bytes = 18.03% decrease)

** Processing: fig/mmra-rohwer-HE2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43871 bytes
Input file size = 44009 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 34628
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 34628

Output IDAT size = 34628 bytes (9243 bytes decrease)
Output file size = 34706 bytes (9303 bytes = 21.14% decrease)

** Processing: fig/mmra-rohwer-HE2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46219 bytes
Input file size = 46357 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 37197
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 37197

Output IDAT size = 37197 bytes (9022 bytes decrease)
Output file size = 37275 bytes (9082 bytes = 19.59% decrease)

** Processing: fig/mmra-rohwer-HE3-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 91495 bytes
Input file size = 91705 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 71390
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 71390

Output IDAT size = 71390 bytes (20105 bytes decrease)
Output file size = 71468 bytes (20237 bytes = 22.07% decrease)

** Processing: fig/mmra-rohwer-HE4-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42021 bytes
Input file size = 42159 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33745
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33745

Output IDAT size = 33745 bytes (8276 bytes decrease)
Output file size = 33823 bytes (8336 bytes = 19.77% decrease)

** Processing: fig/mmra-hern-pairs-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 129048 bytes
Input file size = 129306 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 100697
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 100697

Output IDAT size = 100697 bytes (28351 bytes decrease)
Output file size = 100775 bytes (28531 bytes = 22.06% decrease)

** Processing: fig/mmra-hern-can1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15278 bytes
Input file size = 15368 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12799
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12799

Output IDAT size = 12799 bytes (2479 bytes decrease)
Output file size = 12877 bytes (2491 bytes = 16.21% decrease)

** Processing: fig/mmra-hern-can1-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16142 bytes
Input file size = 16232 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13455
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13455

Output IDAT size = 13455 bytes (2687 bytes decrease)
Output file size = 13533 bytes (2699 bytes = 16.63% decrease)

** Processing: fig/mmra-hern-can2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18311 bytes
Input file size = 18413 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15419
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15419

Output IDAT size = 15419 bytes (2892 bytes decrease)
Output file size = 15497 bytes (2916 bytes = 15.84% decrease)

** Processing: fig/mmra-hern-can2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15740 bytes
Input file size = 15830 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13143
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13143

Output IDAT size = 13143 bytes (2597 bytes decrease)
Output file size = 13221 bytes (2609 bytes = 16.48% decrease)

** Processing: fig/mmra-grades-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 113199 bytes
Input file size = 113433 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 93792
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 93792

Output IDAT size = 93792 bytes (19407 bytes decrease)
Output file size = 93870 bytes (19563 bytes = 17.25% decrease)

** Processing: fig/mmra-grades-can-class-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28050 bytes
Input file size = 28164 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22329
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22329

Output IDAT size = 22329 bytes (5721 bytes decrease)
Output file size = 22407 bytes (5757 bytes = 20.44% decrease)

** Processing: fig/mmra-grades-can-all-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16287 bytes
Input file size = 16377 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13636
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13636

Output IDAT size = 13636 bytes (2651 bytes decrease)
Output file size = 13714 bytes (2663 bytes = 16.26% decrease)

** Processing: fig/mmra-grades-can-all-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20874 bytes
Input file size = 20976 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17479
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17479

Output IDAT size = 17479 bytes (3395 bytes decrease)
Output file size = 17557 bytes (3419 bytes = 16.30% decrease)

--- finished re-building ‘HE_mmra.Rmd’

--- re-building ‘datasets.Rmd’ using rmarkdown

Quitting from datasets.Rmd:112-130 [datasets]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Please install the `litedown` package.
---
Backtrace:
     ▆
  1. └─tools:::.buildOneVignette(...)
  2.   ├─base::tryCatch(...)
  3.   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   └─engine$weave(file, quiet = quiet, encoding = enc)
  7.     └─knitr:::vweave_rmarkdown(...)
  8.       └─rmarkdown::render(...)
  9.         └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           └─knitr:::process_file(text, output)
 11.             ├─xfun:::handle_error(...)
 12.             ├─base::withCallingHandlers(...)
 13.             └─knitr:::process_group(group)
 14.               └─knitr:::call_block(x)
 15.                 └─knitr:::block_exec(params)
 16.                   └─knitr:::eng_r(options)
 17.                     ├─knitr:::in_input_dir(...)
 18.                     │ └─knitr:::in_dir(input_dir(), expr)
 19.                     └─knitr (local) evaluate(...)
 20.                       └─evaluate::evaluate(...)
 21.                         ├─base::withRestarts(...)
 22.                         │ └─base (local) withRestartList(expr, restarts)
 23.                         │   ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                         │   │ └─base (local) doWithOneRestart(return(expr), restart)
 25.                         │   └─base (local) withRestartList(expr, restarts[-nr])
 26.                         │     └─base (local) withOneRestart(expr, restarts[[1L]])
 27.                         │       └─base (local) doWithOneRestart(return(expr), restart)
 28.                         ├─evaluate:::with_handlers(...)
 29.                         │ ├─base::eval(call)
 30.                         │ │ └─base::eval(call)
 31.                         │ └─base::withCallingHandlers(...)
 32.                         └─watcher$print_value(ev$value, ev$visible, envir)
 33.                           ├─base::withVisible(handle_value(handler, value, visible, envir))
 34.                           └─evaluate:::handle_value(handler, value, visible, envir)
 35.                             └─handler$value(value, visible)
 36.                               └─knitr (local) fun(x, options = options)
 37.                                 ├─base::withVisible(knit_print(x, ...))
 38.                                 ├─knitr::knit_print(x, ...)
 39.                                 └─tinytable::knit_print.tinytable(x, ...)
 40.                                   └─tinytable:::build_tt(x, output = output)
 41.                                     ├─base::eval(l)
 42.                                     │ └─base::eval(l)
 43.                                     └─tinytable:::format_tt_lazy(...)
 44.                                       └─tinytable:::assert_dependency("litedown")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'datasets.Rmd' failed with diagnostics:
Please install the `litedown` package.
--- failed re-building ‘datasets.Rmd’

--- re-building ‘repeated-JSS.pdf.asis’ using asis
--- finished re-building ‘repeated-JSS.pdf.asis’

SUMMARY: processing the following file failed:
  ‘datasets.Rmd’

Error: Vignette re-building failed.
Execution halted